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一种环境分离株的基因组数据显示与K-12参考菌株MG1655高度相似。

Genomic data of an environmental isolate shows high resemblance to K-12 reference strain MG1655.

作者信息

Holden Nicola

机构信息

SRUC, Department of Rural Land Use, Craibstone Estate, Aberdeen AB21 9YA, UK.

Cell and Molecular Sciences, James Hutton Institute, Dundee DD2 5DA, UK.

出版信息

Data Brief. 2021 Nov 18;39:107586. doi: 10.1016/j.dib.2021.107586. eCollection 2021 Dec.

Abstract

species exhibits a high genomic diversification from evolution, mobile genetic elements and recombination. An environmental isolate, 'JHI_5025' from a crop trial appeared to be clonally related to the historical reference isolate K-12 strain 'MG1655', warranting further genomic analysis. Their genomes share an average nucleotide identity of 99.74% and whole genome alignment showed little rearrangement of the JHI_5025 sequence compared to the reference. Five genomic islands not in the reference aligned to other sequences in the . Isolate JHI_5025 contained K-12 F plasmid sequence and at least one complete prophage sequence. The genome and comparison dataset provides utility of JHI_5025 as a representative contemporary genetic mimic of a well-known and much used workhorse strain.

摘要

该物种在进化、移动遗传元件和重组过程中表现出高度的基因组多样性。从作物试验中分离出的环境菌株“JHI_5025”似乎与历史参考菌株K-12菌株“MG1655”存在克隆相关性,因此有必要进行进一步的基因组分析。它们的基因组平均核苷酸同一性为99.74%,全基因组比对显示,与参考序列相比,JHI_5025序列几乎没有重排。参考序列中没有的五个基因组岛与其他序列比对。分离株JHI_5025包含K-12 F质粒序列和至少一个完整的原噬菌体序列。该基因组和比较数据集表明JHI_5025可作为一种具有代表性的当代遗传模拟物,模拟一种广为人知且常用的主力菌株。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c40/8609132/a3eb6158eb7b/gr1.jpg

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