Holden Nicola
SRUC, Department of Rural Land Use, Craibstone Estate, Aberdeen AB21 9YA, UK.
Cell and Molecular Sciences, James Hutton Institute, Dundee DD2 5DA, UK.
Data Brief. 2021 Nov 18;39:107586. doi: 10.1016/j.dib.2021.107586. eCollection 2021 Dec.
species exhibits a high genomic diversification from evolution, mobile genetic elements and recombination. An environmental isolate, 'JHI_5025' from a crop trial appeared to be clonally related to the historical reference isolate K-12 strain 'MG1655', warranting further genomic analysis. Their genomes share an average nucleotide identity of 99.74% and whole genome alignment showed little rearrangement of the JHI_5025 sequence compared to the reference. Five genomic islands not in the reference aligned to other sequences in the . Isolate JHI_5025 contained K-12 F plasmid sequence and at least one complete prophage sequence. The genome and comparison dataset provides utility of JHI_5025 as a representative contemporary genetic mimic of a well-known and much used workhorse strain.
该物种在进化、移动遗传元件和重组过程中表现出高度的基因组多样性。从作物试验中分离出的环境菌株“JHI_5025”似乎与历史参考菌株K-12菌株“MG1655”存在克隆相关性,因此有必要进行进一步的基因组分析。它们的基因组平均核苷酸同一性为99.74%,全基因组比对显示,与参考序列相比,JHI_5025序列几乎没有重排。参考序列中没有的五个基因组岛与其他序列比对。分离株JHI_5025包含K-12 F质粒序列和至少一个完整的原噬菌体序列。该基因组和比较数据集表明JHI_5025可作为一种具有代表性的当代遗传模拟物,模拟一种广为人知且常用的主力菌株。