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基于细胞焦亡相关基因构建脑胶质瘤预后模型。

Development of a Prognostic Model of Glioma Based on Pyroptosis-Related Genes.

机构信息

The Fifth Clinical Medical College of Shanxi Medical University, Tai Yuan, China.

The Fifth Clinical Medical College of Shanxi Medical University, Tai Yuan, China; Department of Neurosurgery, Shanxi Provincial People's Hospital, Tai Yuan, China.

出版信息

World Neurosurg. 2022 Feb;158:e929-e945. doi: 10.1016/j.wneu.2021.11.112. Epub 2021 Nov 30.

Abstract

BACKGROUND

Glioma is the most malignant tumor of the central nervous system, with a poor prognosis. Pyroptosis is known to regulate the malignant phenotype of tumor cells, thus affecting the prognosis of patients. However, the role of pyroptosis-related genes (PRGs) in glioma remains unclear.

METHODS

We used the Cancer Genome Atlas (TCGA), Chinese Glioma Genome Atlas (CGGA), and Rembrandt database of patients with glioma to construct a PRG-based prognostic model and analyzed the relationship between the prognostic model and tumor immune microenvironment. The Wilcox test was used to compare the expression of PRGs in glioma and normal tissues based on TCGA. Univariate Cox and LASSO regression were used to construct the prognostic model. The CGGA and Rembrandt database were used as validation sets to validate the model.

RESULTS

Five genes were included in the model (BAX, CASP1, CASP3, CASP6, and NOD1). The survival of patients in the high-risk group was lower than that in the low-risk group. The receiver operating characteristic curve showed that the model had good prognostic evaluation ability and accuracy in all 3 cohorts of patients with glioma. The correlation analysis between the prognostic model and immune infiltration showed that the degree of immune cell infiltration, immune response process, and the expression level of immune checkpoints in the high-risk group were higher than those in the low-risk group.

CONCLUSIONS

We have constructed a reliable PRG-related prognostic model, which can provide reference for the prognostic evaluation of patients with glioma.

摘要

背景

脑胶质瘤是中枢神经系统最恶性的肿瘤,预后较差。细胞焦亡被认为可以调控肿瘤细胞的恶性表型,从而影响患者的预后。然而,细胞焦亡相关基因(PRGs)在脑胶质瘤中的作用尚不清楚。

方法

我们利用癌症基因组图谱(TCGA)、中国脑胶质瘤基因组图谱(CGGA)和 Rembrandt 数据库中的脑胶质瘤患者数据构建了基于 PRG 的预后模型,并分析了该模型与肿瘤免疫微环境的关系。基于 TCGA,Wilcox 检验比较了脑胶质瘤和正常组织中 PRGs 的表达。采用单因素 Cox 和 LASSO 回归构建预后模型。CGGA 和 Rembrandt 数据库被用作验证集来验证模型。

结果

该模型包含 5 个基因(BAX、CASP1、CASP3、CASP6 和 NOD1)。高危组患者的生存率低于低危组。受试者工作特征曲线表明,该模型在所有 3 组脑胶质瘤患者中均具有良好的预后评估能力和准确性。预后模型与免疫浸润的相关性分析表明,高危组的免疫细胞浸润程度、免疫反应过程以及免疫检查点的表达水平均高于低危组。

结论

我们构建了一个可靠的 PRG 相关预后模型,可为脑胶质瘤患者的预后评估提供参考。

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