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大多数肌病性核纤层蛋白变体聚集:一种用于评估意义未明变体的功能基因组学方法。

Most myopathic lamin variants aggregate: a functional genomics approach for assessing variants of uncertain significance.

作者信息

Anderson Corey L, Langer Emma R, Routes Timothy C, McWilliams Seamus F, Bereslavskyy Igor, Kamp Timothy J, Eckhardt Lee L

机构信息

Department of Medicine, University of Wisconsin-Madison, Madison, WI, 53705, USA.

Cellular and Molecular Arrhythmias Research Program, University of Wisconsin-Madison, Madison, WI, 53705, USA.

出版信息

NPJ Genom Med. 2021 Dec 3;6(1):103. doi: 10.1038/s41525-021-00265-x.

DOI:10.1038/s41525-021-00265-x
PMID:34862408
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8642518/
Abstract

Hundreds of LMNA variants have been associated with several distinct disease phenotypes. However, genotype-phenotype relationships remain largely undefined and the impact for most variants remains unknown. We performed a functional analysis for 178 variants across five structural domains using two different overexpression models. We found that lamin A aggregation is a major determinant for skeletal and cardiac laminopathies. An in vitro solubility assay shows that aggregation-prone variants in the immunoglobulin-like domain correlate with domain destabilization. Finally, we demonstrate that myopathic-associated LMNA variants show aggregation patterns in induced pluripotent stem cell derived-cardiomyocytes (iPSC-CMs) in contrast to non-myopathic LMNA variants. Our data-driven approach (1) reveals that striated muscle laminopathies are predominantly protein misfolding diseases, (2) demonstrates an iPSC-CM experimental platform for characterizing laminopathic variants in human cardiomyocytes, and (3) supports a functional assay to aid in assessing pathogenicity for myopathic variants of uncertain significance.

摘要

数百种LMNA基因变体与几种不同的疾病表型相关。然而,基因型与表型之间的关系在很大程度上仍不明确,大多数变体的影响尚不清楚。我们使用两种不同的过表达模型对五个结构域中的178个变体进行了功能分析。我们发现核纤层蛋白A聚集是骨骼和心脏核纤层蛋白病的主要决定因素。体外溶解度分析表明,免疫球蛋白样结构域中易于聚集的变体与结构域不稳定相关。最后,我们证明,与非肌病性LMNA变体相比,肌病相关的LMNA变体在诱导多能干细胞衍生的心肌细胞(iPSC-CM)中显示出聚集模式。我们的数据驱动方法(1)揭示横纹肌核纤层蛋白病主要是蛋白质错误折叠疾病,(2)展示了一个用于表征人类心肌细胞核纤层蛋白病变体的iPSC-CM实验平台,并(3)支持一种功能测定法,以帮助评估意义不确定的肌病性变体的致病性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38cd/8642518/ad7a6e2b6788/41525_2021_265_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38cd/8642518/af53b4002216/41525_2021_265_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38cd/8642518/7fcb4064306d/41525_2021_265_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38cd/8642518/393301b17ff7/41525_2021_265_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38cd/8642518/2ff7d968ccf8/41525_2021_265_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38cd/8642518/87cabbd10f12/41525_2021_265_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38cd/8642518/ad7a6e2b6788/41525_2021_265_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38cd/8642518/af53b4002216/41525_2021_265_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38cd/8642518/7fcb4064306d/41525_2021_265_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38cd/8642518/393301b17ff7/41525_2021_265_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38cd/8642518/2ff7d968ccf8/41525_2021_265_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38cd/8642518/87cabbd10f12/41525_2021_265_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38cd/8642518/ad7a6e2b6788/41525_2021_265_Fig6_HTML.jpg

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