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多氨基酸-多转运体系统的数学模型预测 CHO 细胞的摄取通量。

Mathematical model of the multi-amino acid multi-transporter system predicts uptake flux in CHO cells.

机构信息

Chemical Engineering and Process Development Division, CSIR-National Chemical Laboratory, Pune 411008, India.

Chemical Engineering and Process Development Division, CSIR-National Chemical Laboratory, Pune 411008, India.

出版信息

J Biotechnol. 2022 Jan 20;344:40-49. doi: 10.1016/j.jbiotec.2021.12.003. Epub 2021 Dec 9.

Abstract

Supply and uptake of amino acids is of great importance to mammalian cell culture processes. Mammalian cells such as Chinese hamster ovary (CHO) cells express several amino acid (AA) transporters including uniporters and exchangers. Each transporter transports multiple AAs, making prediction of the effect of changed medium composition or transporter levels on individual AA transport rate challenging. A general kinetic model for such combinatorial amino acid transport, and a simplified analytical expression for the uptake rate as a function of amino acid concentrations and transporter levels is presented. From this general model, a CHO cell-specific AA transport model, to our knowledge the first such network model for any cell type, is constructed. The model is validated by its prediction of reported uptake flux and dependencies from experiments that were not used in model construction or parameter estimation. The model defines theoretical conditions for synergistic/repressive effect on the uptake rates of other AAs upon external addition of one AA. The ability of the CHO-specific model to predict amino acid interdependencies experimentally observed in other mammalian cell types suggests its robustness. This model will help formulate testable hypotheses of the effect of process changes on AA initial uptake, and serve as the AA transport component of kinetic models for cellular metabolism.

摘要

氨基酸的供应和摄取对哺乳动物细胞培养过程非常重要。哺乳动物细胞,如中国仓鼠卵巢(CHO)细胞,表达多种氨基酸(AA)转运体,包括单载体和交换体。每种转运体运输多种 AA,这使得预测改变培养基成分或转运体水平对单个 AA 转运速率的影响具有挑战性。本文提出了一种组合氨基酸转运的通用动力学模型,以及一个简化的分析表达式,用于描述转运速率与氨基酸浓度和转运体水平的关系。基于这个通用模型,构建了一个 CHO 细胞特异性 AA 转运模型,据我们所知,这是第一个针对任何细胞类型的网络模型。该模型通过预测报告的摄取通量和实验依赖性得到验证,这些实验没有用于模型构建或参数估计。该模型定义了在外部添加一种 AA 时对其他 AA 摄取速率产生协同/抑制作用的理论条件。CHO 特异性模型能够预测其他哺乳动物细胞类型中观察到的氨基酸相互依赖关系,这表明其具有稳健性。该模型将有助于制定关于工艺变化对 AA 初始摄取影响的可测试假设,并作为细胞代谢的动力学模型中 AA 转运部分。

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