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一种基于网络分析的新型集成推荐方法,用于鉴定结核病的有效药物。

A novel ensemble based recommendation approach using network based analysis for identification of effective drugs for Tuberculosis.

机构信息

School of Computer Science and Engineering, Vellore Institute of Technology (VIT), Vellore - 632014, Tamil Nadu, India.

出版信息

Math Biosci Eng. 2022 Jan;19(1):873-891. doi: 10.3934/mbe.2022040. Epub 2021 Nov 22.

Abstract

Tuberculosis (TB) is a fatal infectious disease which affected millions of people worldwide for many decades and now with mutating drug resistant strains, it poses bigger challenges in treatment of the patients. Computational techniques might play a crucial role in rapidly developing new or modified anti-tuberculosis drugs which can tackle these mutating strains of TB. This research work applied a computational approach to generate a unique recommendation list of possible TB drugs as an alternate to a popular drug, EMB, by first securing an initial list of drugs from a popular online database, PubChem, and thereafter applying an ensemble of ranking mechanisms. As a novelty, both the pharmacokinetic properties and some network based attributes of the chemical structure of the drugs are considered for generating separate recommendation lists. The work also provides customized modifications on a popular and traditional ensemble ranking technique to cater to the specific dataset and requirements. The final recommendation list provides established chemical structures along with their ranks, which could be used as alternatives to EMB. It is believed that the incorporation of both pharmacokinetic and network based properties in the ensemble ranking process added to the effectiveness and relevance of the final recommendation.

摘要

结核病(TB)是一种致命的传染病,几十年来在全球范围内影响了数百万人,现在由于耐药性不断变异的菌株,给患者的治疗带来了更大的挑战。计算技术可能在快速开发新的或改良的抗结核药物方面发挥关键作用,这些药物可以应对这些不断变异的结核菌株。这项研究工作采用了一种计算方法,通过从一个流行的在线数据库 PubChem 中首先获得初始药物列表,然后应用一系列排名机制,为一种流行药物 EMB 生成独特的潜在 TB 药物推荐列表。新颖之处在于,药物化学结构的药代动力学特性和一些基于网络的属性都被考虑用于生成单独的推荐列表。该工作还对一种流行的传统集成排名技术进行了定制修改,以满足特定数据集和要求。最终的推荐列表提供了已建立的化学结构及其排名,可作为 EMB 的替代品。人们相信,在集成排名过程中同时考虑药代动力学和基于网络的特性,增加了最终推荐的有效性和相关性。

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