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用于密度泛函测试的无机固体代表性集的相似性聚类

Similarity Clustering for Representative Sets of Inorganic Solids for Density Functional Testing.

作者信息

Kovács Péter, Tran Fabien, Hanbury Allan, Madsen Georg K H

机构信息

Institute of Materials Chemistry, Technical University of Vienna, Getreidemarkt 9/165-TC, A-1060 Vienna, Austria.

Institute for Information Systems Engineering, Technical University of Vienna, Favoritenstrasse 9-11/194, A-1040 Vienna, Austria.

出版信息

J Chem Theory Comput. 2022 Jan 11;18(1):441-447. doi: 10.1021/acs.jctc.1c00536. Epub 2021 Dec 17.

DOI:10.1021/acs.jctc.1c00536
PMID:34919396
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8757462/
Abstract

Benchmarking DFT functionals is complicated since the results highly depend on which properties and materials were used in the process. Unwanted biases can be introduced if a data set contains too many examples of very similar materials. We show that a clustering based on the distribution of density gradient and kinetic energy density is able to identify groups of chemically distinct solids. We then propose a method to create smaller data sets or rebalance existing data sets in a way that no region of the meta-GGA descriptor space is overrepresented, yet the new data set reproduces average errors of the original set as closely as possible. We apply the method to an existing set of 44 inorganic solids and suggest a representative set of seven solids. The representative sets generated with this method can be used to make more general benchmarks or to train new functionals.

摘要

对密度泛函理论(DFT)泛函进行基准测试很复杂,因为结果高度依赖于过程中使用的性质和材料。如果数据集包含太多非常相似材料的示例,可能会引入不必要的偏差。我们表明,基于密度梯度和动能密度分布的聚类能够识别化学性质不同的固体组。然后,我们提出了一种方法来创建更小的数据集或以某种方式重新平衡现有数据集,使得元广义梯度近似(meta-GGA)描述符空间的任何区域都不会被过度代表,同时新数据集尽可能紧密地重现原始数据集的平均误差。我们将该方法应用于现有的44种无机固体数据集,并提出了一个由七种固体组成的代表性数据集。用这种方法生成的代表性数据集可用于进行更通用的基准测试或训练新的泛函。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/566c/8757462/93b85bc439ec/ct1c00536_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/566c/8757462/d29c1520e41a/ct1c00536_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/566c/8757462/93b85bc439ec/ct1c00536_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/566c/8757462/d29c1520e41a/ct1c00536_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/566c/8757462/93b85bc439ec/ct1c00536_0002.jpg

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本文引用的文献

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WIEN2k: An APW+lo program for calculating the properties of solids.WIEN2k:一个用于计算固体性质的全势缀加平面波加局域轨道(APW+lo)程序。
J Chem Phys. 2020 Feb 21;152(7):074101. doi: 10.1063/1.5143061.
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Comparative study of the PBE and SCAN functionals: The particular case of alkali metals.PBE和SCAN泛函的比较研究:碱金属的特殊情况。
J Chem Phys. 2019 Apr 28;150(16):164119. doi: 10.1063/1.5092748.
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Orbital-free approximations to the kinetic-energy density in exchange-correlation MGGA functionals: Tests on solids.无轨道近似交换相关泛函中动能密度的方法:对固体的测试。
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J Chem Phys. 2016 May 28;144(20):204120. doi: 10.1063/1.4948636.
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Strongly Constrained and Appropriately Normed Semilocal Density Functional.强约束且适当归一化的半局部密度泛函。
Phys Rev Lett. 2015 Jul 17;115(3):036402. doi: 10.1103/PhysRevLett.115.036402. Epub 2015 Jul 14.
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Density functionals that recognize covalent, metallic, and weak bonds.识别共价键、金属键和弱键的密度泛函。
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mBEEF: an accurate semi-local Bayesian error estimation density functional.mBEEF:一种精确的半局部贝叶斯误差估计密度泛函。
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Assessment of Gaussian-3 and density-functional theories on the G3/05 test set of experimental energies.基于G3/05实验能量测试集对高斯-3理论和密度泛函理论的评估。
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