Vickram A S, Anbarasu K, Jeyanthi Palanivelu, Gulothungan G, Nanmaran R, Thanigaivel S, Sridharan T B, Rohini Karunakaran
Department of Biotechnology, Saveetha School of Engineering (SSE), SIMATS, Chennai, India.
Department of Bioinformatics, Saveetha School of Engineering (SSE), SIMATS, Chennai, India.
Front Med (Lausanne). 2021 Dec 3;8:723019. doi: 10.3389/fmed.2021.723019. eCollection 2021.
Semen parameters are been found as a key factor to evaluate the count and morphology in the given semen sample. The deep knowledge of male infertility will unravel with semen parameters correlated with molecular and biochemical parameters. The current research study is to identify the motility associated protein and its structure through the approach. Semen samples were collected and initial analysis including semen parameters was analyzed by using the World Health Organization protocol. Semen biochemical parameters, namely, seminal plasma protein concentration, fructose content, and glucosidase content were calculated and evaluated for correlation. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF) were carried out for identification of Septin-4 presence in the semen sample. Mascot search was done for protein conformation and - characterization of Septin-4 by structural modeling in Iterative Threading Assembly Refinement (I-TASSER). Twenty-five nanoseconds molecular dynamics (MD) simulations results showed the stable nature of Septin-4 in the dynamic system. Overall, our results showed the presence of motility-associated protein in normospermia and control samples and not in the case of asthenospermia and oligoasthenospermia. Molecular techniques characterized the presence of Septin-4 and as a novel biomarker for infertility diagnosis.
精液参数已被发现是评估给定精液样本中精子数量和形态的关键因素。随着精液参数与分子和生化参数相关联,对男性不育症的深入了解将会明晰。当前的研究旨在通过该方法鉴定与活力相关的蛋白质及其结构。收集精液样本,并按照世界卫生组织的方案对包括精液参数在内的初始分析进行分析。计算并评估精液生化参数,即精浆蛋白浓度、果糖含量和糖苷酶含量之间的相关性。进行十二烷基硫酸钠-聚丙烯酰胺凝胶电泳(SDS-PAGE)和基质辅助激光解吸/电离飞行时间(MALDI-TOF)以鉴定精液样本中是否存在Septin-4。通过迭代穿线装配优化(I-TASSER)中的结构建模对Septin-4的蛋白质构象和特征进行 Mascot 搜索。二十五纳秒的分子动力学(MD)模拟结果显示了Septin-4在动态系统中的稳定性。总体而言,我们的结果表明,正常精子症和对照样本中存在与活力相关的蛋白质,而弱精子症和少弱精子症样本中则不存在。分子技术鉴定了Septin-4的存在,并将其作为不育症诊断的新型生物标志物。