Selection of a reference gene for studies on lipid-related aquatic adaptations of toothed whales ().

Toothed whales are one group of marine mammals that has developed special adaptations, such as echolocation for predation, to successfully live in a dynamic aquatic environment. Their fat metabolism may differ from that of other mammals because toothed whales have acoustic fats. Gene expression in the metabolic pathways of animals can change with respect to their evolution and environment. A real-time quantitative polymerase chain reaction (RT-qPCR) is a reliable technique for studying the relative expressions of genes. However, since the accuracy of RT-qPCR data is totally dependent on the reference gene, the selection of the reference gene is an essential step. In this study, 10 candidate reference genes (, , , , , , , , , and ) were initially tested for amplification efficiency using RT-qPCR. After excluding , the remaining nine genes, which are nearly 100% efficient, were selected for the gene stability analysis. Stable reference genes across eight different fat tissue, liver, and muscle samples from were identified by four algorithms, which were provided in Genorm, NormFinder, BestKeeper, and Delta CT. Finally, a RefFinder comprehensive ranking was performed based on the stability values, and the nine genes were ranked as follows: > > > > > > > > . The and genes were identified as the most stable novel reference genes. The third-ranked gene, , is a well-known housekeeping gene for mammals. Ultimately, we suggest the use of as a reliable novel reference gene for genomics studies on the lipid-related aquatic adaptations of toothed whales.