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甲硫氨酸代谢基因下调,并丰富了与蛋白质相关的翻译过程,从而恶化了肝细胞癌的预后。

Downregulation of Methionine Cycle Genes and Enriches Protein-Associated Translation Process and Worsens Hepatocellular Carcinoma Prognosis.

机构信息

Department of Food Science and Biotechnology, National Chung Hsing University, Taichung 40402, Taiwan.

Innovation and Development Center of Sustainable Agriculture (IDCSA), National Chung Hsing University, Taichung 40402, Taiwan.

出版信息

Int J Mol Sci. 2022 Jan 1;23(1):481. doi: 10.3390/ijms23010481.

Abstract

The major biological methyl donor, -adenosylmethionine (adoMet) synthesis occurs mainly in the liver. Methionine adenosyltransferase 1A (MAT1A) and glycine N-methyltransferase (GNMT) are two key enzymes involved in the functional implications of that variation. We collected 42 RNA-seq data from paired hepatocellular carcinoma (HCC) and its adjacent normal liver tissue from the Cancer Genome Atlas (TCGA). There was no mutation found in or RNA in the 42 HCC patients. The 11,799 genes were annotated in the RNA-Seq data, and their expression levels were used to investigate the phenotypes of low and low by Gene Set Enrichment Analysis (GSEA). The REACTOME_TRANSLATION gene set was enriched and visualized in a heatmap along with corresponding differences in gene expression between low versus high and low versus high . We identified 43 genes of the REACTOME_TRANSLATION gene set that are powerful prognosis factors in HCC. The significantly predicted genes were referred into eukaryotic translation initiation (EIF3B, EIF3K), eukaryotic translation elongation (EEF1D), and ribosomal proteins (RPs). Cell models expressing various and proved that simultaneous restoring the expression of and decreased cell proliferation, invasion, as well as the REACTOME_TRANSLATION gene , consistent with a better prognosis in human HCC. We demonstrated new findings that downregulation or defect in and genes can enrich the protein-associated translation process that may account for poor HCC prognosis. This is the first study demonstrated that MAT1A and GNMT, the 2 key enzymes involved in methionine cycle, could attenuate the function of ribosome translation. We propose a potential novel mechanism by which the diminished GNMT and MAT1A expression may confer poor prognosis for HCC.

摘要

主要的生物甲基供体 - 腺苷甲硫氨酸(adoMet)合成主要发生在肝脏中。甲硫氨酸腺苷转移酶 1A(MAT1A)和甘氨酸 N-甲基转移酶(GNMT)是两种参与该变异功能的关键酶。我们从癌症基因组图谱(TCGA)中收集了 42 对肝细胞癌(HCC)及其相邻正常肝组织的 RNA-seq 数据。在 42 例 HCC 患者中未发现 或 中的突变。RNA-Seq 数据中注释了 11799 个基因,并用基因集富集分析(GSEA)来研究低 和低 的表型。REACTOME_TRANSLATION 基因集在热图中富集并可视化,同时显示低 与高 之间以及低 与高 之间基因表达的差异。我们确定了 REACTOME_TRANSLATION 基因集中的 43 个基因是 HCC 的有力预后因素。显著预测的基因被归入真核翻译起始(EIF3B、EIF3K)、真核翻译延伸(EEF1D)和核糖体蛋白(RPs)。表达各种 和 的细胞模型证明,同时恢复 和 的表达可降低细胞增殖、侵袭以及 REACTOME_TRANSLATION 基因 ,与人类 HCC 的较好预后一致。我们证明了新的发现,即下调或缺陷 和 基因可富集与蛋白质相关的翻译过程,这可能是 HCC 预后不良的原因。这是第一项研究表明,参与蛋氨酸循环的 2 种关键酶 MAT1A 和 GNMT 可减弱核糖体翻译的功能。我们提出了一种潜在的新机制,即降低的 GNMT 和 MAT1A 表达可能导致 HCC 预后不良。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb20/8745498/9b6773e5257d/ijms-23-00481-g001.jpg

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