School of Medical Sciences, The University of Sydney, Sydney, New South Wales 2006, Australia.
ACS Chem Biol. 2022 Feb 18;17(2):426-437. doi: 10.1021/acschembio.1c00879. Epub 2022 Jan 11.
Biosynthesis of the hydroxamic acid siderophore desferrioxamine D (DFOD, ), which is the -acetylated analogue of desferrioxamine B (DFOB, ), has been delineated. Enzyme-independent Ac-CoA-mediated -acetylation of produced , in addition to three constitutional isomers containing an N--acetyl group installed at either one of the three hydroxamic acid groups of . The formation of -Ac-DFOB (DFOD, ) and the composite of N--acetylated isomers N--Ac-DFOB[001] (), N--Ac-DFOB[010] (), and N--Ac-DFOB[100] () (defined as the N--Ac motif positioned within the terminal amine, internal, or -acetylated region of , respectively), was pH-dependent, with - dominant at pH < 8.5 and dominant at pH > 8.5. The trend in the pH dependence was consistent with the p values of the NH (p ∼ 10) and N-OH (p ∼ 8.5-9) groups in . The - and N--acetyl motifs can be conceived as a post-biosynthetic modification (PBM) of a nonproteinaceous secondary metabolite, akin to a post-translational modification (PTM) of a protein. The pH-labile N--acetyl group could act as a reversible switch to modulate the properties and functions of secondary metabolites, including hydroxamic acid siderophores. An alternative (most likely minor) biosynthetic pathway for showed that the nonribosomal peptide synthetase-independent siderophore synthetase DesD was competent in condensing -acetyl--succinyl--hydroxy-1,5-diaminopentane (-Ac-SHDP, ) with the dimeric hydroxamic acid precursor (AHDP-SHDP, ) native to biosynthesis to generate . The strategy of diversifying protein structure and function using PTMs could be paralleled in secondary metabolites with the use of PBMs.
已阐明了羟肟酸类铁载体去铁胺 D(DFOD,)的生物合成,DFOD 是去铁胺 B(DFOB,)的 -乙酰化类似物。酶独立的 Ac-CoA 介导的 -乙酰化作用于 产生 ,此外还包含三个结构异构体,它们在 三个羟肟酸基团中的一个上含有 N--乙酰基。-Ac-DFOB(DFOD,)的形成以及 N--乙酰化异构体的复合物 N--Ac-DFOB[001]()、N--Ac-DFOB[010]()和 N--Ac-DFOB[100]()(分别定义为位于末端胺、内部或 -乙酰化区域内的 N--Ac 基序)的形成是 pH 依赖性的,在 pH < 8.5 时 - 占优势,在 pH > 8.5 时 占优势。这种 pH 依赖性的趋势与 中 NH(p∼10)和 N-OH(p∼8.5-9)基团的 p 值一致。-和 N--乙酰基基序可以被视为非蛋白类次生代谢物的后生修饰(PBM),类似于蛋白质的翻译后修饰(PTM)。不稳定的 pH 的 N--乙酰基可以作为调节次生代谢物(包括羟肟酸类铁载体)性质和功能的可逆开关。另一种(可能是次要的) 生物合成途径表明,非核糖体肽合成酶独立的铁载体合成酶 DesD 能够在 -乙酰基--琥珀酰基--羟-1,5-二氨基戊烷(-Ac-SHDP,)与二聚体羟肟酸前体(AHDP-SHDP,)缩合,生成 。使用 PTM 来多样化蛋白质结构和功能的策略可以在使用 PBM 的次生代谢物中得到类似的应用。