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冰结合蛋白(FfIBP)的刚性对高温滞后活性和微生物存活的重要性。

Importance of rigidity of ice-binding protein (FfIBP) for hyperthermal hysteresis activity and microbial survival.

作者信息

Hwang Jisub, Kim Bomi, Lee Min Ju, Kim Eun Jae, Cho Sung Mi, Lee Sung Gu, Han Se Jong, Kim Kitae, Lee Jun Hyuck, Do Hackwon

机构信息

Research Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon 21990, Republic of Korea; Department of Polar Sciences, University of Science and Technology, Incheon 21990, Republic of Korea.

Research Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon 21990, Republic of Korea.

出版信息

Int J Biol Macromol. 2022 Apr 15;204:485-499. doi: 10.1016/j.ijbiomac.2022.02.032. Epub 2022 Feb 9.

DOI:10.1016/j.ijbiomac.2022.02.032
PMID:35149098
Abstract

Ice-binding proteins (IBPs) are well-characterized proteins responsible for the cold-adaptation mechanisms. Despite extensive structural and biological investigation of IBPs and antifreeze proteins, only a few studies have considered the relationship between protein stabilization and thermal hysteresis (TH) activity as well as the implication of hyperactivity. Here, we investigated the important role of the head capping region in stabilization and the hyper-TH activity of FfIBP using molecular dynamics simulation. Data comparison revealed that residues on the ice-binding site of the hyperactive FfIBP are immobilized, which could be correlated with TH activity. Further comparison analysis indicated the disulfide bond in the head region is mainly involved in protein stabilization and is crucial for hyper-TH activity. This finding could also be generalized to known hyperactive IBPs. Furthermore, in mimicking the physiological conditions, bacteria with membrane-anchored FfIBP formed brine pockets in a TH activity-dependent manner. Cells with a higher number of TH-active IBPs showed an increased number of brine pockets, which may be beneficial for short- and long-term survival in cold environments by reducing the salt concentration. The newly identified conditions for hyper-TH activity and their implications on bacterial survival provide insights into novel mechanistic aspects of cold adaptation in polar microorganisms.

摘要

冰结合蛋白(IBPs)是一类具有明确特征的蛋白质,负责冷适应机制。尽管对IBPs和抗冻蛋白进行了广泛的结构和生物学研究,但只有少数研究考虑了蛋白质稳定性与热滞(TH)活性之间的关系以及超活性的影响。在这里,我们使用分子动力学模拟研究了头部封端区域在FfIBP稳定性和超TH活性中的重要作用。数据比较显示,超活性FfIBP的冰结合位点上的残基是固定的,这可能与TH活性相关。进一步的比较分析表明,头部区域的二硫键主要参与蛋白质稳定性,对超TH活性至关重要。这一发现也可以推广到已知的超活性IBPs。此外,在模拟生理条件下,具有膜锚定FfIBP的细菌以TH活性依赖的方式形成盐水囊。具有较高数量TH活性IBPs的细胞显示出更多的盐水囊,这可能通过降低盐浓度有利于在寒冷环境中的短期和长期生存。新发现的超TH活性条件及其对细菌生存的影响为极地微生物冷适应的新机制方面提供了见解。

相似文献

1
Importance of rigidity of ice-binding protein (FfIBP) for hyperthermal hysteresis activity and microbial survival.冰结合蛋白(FfIBP)的刚性对高温滞后活性和微生物存活的重要性。
Int J Biol Macromol. 2022 Apr 15;204:485-499. doi: 10.1016/j.ijbiomac.2022.02.032. Epub 2022 Feb 9.
2
Structure-based characterization and antifreeze properties of a hyperactive ice-binding protein from the Antarctic bacterium Flavobacterium frigoris PS1.来自南极嗜冷黄杆菌PS1的一种高活性冰结合蛋白的基于结构的表征及抗冻特性
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Adsorption of ice-binding proteins onto whole ice crystal surfaces does not necessarily confer a high thermal hysteresis activity.冰结合蛋白吸附在整个冰晶表面上并不一定赋予其高的热滞活性。
Sci Rep. 2022 Sep 14;12(1):15443. doi: 10.1038/s41598-022-19803-3.

引用本文的文献

1
Engineered ice-binding protein (FfIBP) shows increased stability and resistance to thermal and chemical denaturation compared to the wildtype.与野生型相比,工程化冰结合蛋白 (FfIBP) 表现出更高的稳定性和对热及化学变性的抗性。
Sci Rep. 2024 Feb 8;14(1):3234. doi: 10.1038/s41598-024-53864-w.