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用于冰结合蛋白研究的由LabVIEW操作的新型纳升渗透压计。

LabVIEW-operated novel nanoliter osmometer for ice binding protein investigations.

作者信息

Braslavsky Ido, Drori Ran

机构信息

Institute of Biochemistry, Food Science, and Nutrition, The Robert H. Smith Faculty of Agriculture, Food, and Environment, The Hebrew University of Jerusalem, Israel.

出版信息

J Vis Exp. 2013 Feb 4(72):e4189. doi: 10.3791/4189.

DOI:10.3791/4189
PMID:23407403
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3597038/
Abstract

Ice-binding proteins (IBPs), including antifreeze proteins, ice structuring proteins, thermal hysteresis proteins, and ice recrystallization inhibition proteins, are found in cold-adapted organisms and protect them from freeze injuries by interacting with ice crystals. IBPs are found in a variety of organism, including fish(1), plants(2, 3), arthropods(4, 5), fungi(6), and bacteria(7). IBPs adsorb to the surfaces of ice crystals and prevent water molecules from joining the ice lattice at the IBP adsorption location. Ice that grows on the crystal surface between the adsorbed IBPs develops a high curvature that lowers the temperature at which the ice crystals grow, a phenomenon referred to as the Gibbs-Thomson effect. This depression creates a gap (thermal hysteresis, TH) between the melting point and the nonequilibrium freezing point, within which ice growth is arrested(8-10), see Figure 1. One of the main tools used in IBP research is the nanoliter osmometer, which facilitates measurements of the TH activities of IBP solutions. Nanoliter osmometers, such as the Clifton instrument (Clifton Technical Physics, Hartford, NY,) and Otago instrument (Otago Osmometers, Dunedin, New Zealand), were designed to measure the osmolarity of a solution by measuring the melting point depression of droplets with nanoliter volumes. These devices were used to measure the osmolarities of biological samples, such as tears(11), and were found to be useful in IBP research. Manual control over these nanoliter osmometers limited the experimental possibilities. Temperature rate changes could not be controlled reliably, the temperature range of the Clifton instrument was limited to 4,000 mOsmol (about -7.5 °C), and temperature recordings as a function of time were not an available option for these instruments. We designed a custom-made computer-controlled nanoliter osmometer system using a LabVIEW platform (National Instruments). The cold stage, described previously(9, 10), contains a metal block through which water circulates, thereby functioning as a heat sink, see Figure 2. Attached to this block are thermoelectric coolers that may be driven using a commercial temperature controller that can be controlled via LabVIEW modules, see Figure 3. Further details are provided below. The major advantage of this system is its sensitive temperature control, see Figure 4. Automated temperature control permits the coordination of a fixed temperature ramp with a video microscopy output containing additional experimental details. To study the time dependence of the TH activity, we tested a 58 kDa hyperactive IBP from the Antarctic bacterium Marinomonas primoryensis (MpIBP)(12). This protein was tagged with enhanced green fluorescence proteins (eGFP) in a construct developed by Peter Davies' group (Queens University)(10). We showed that the temperature change profile affected the TH activity. Excellent control over the temperature profile in these experiments significantly improved the TH measurements. The nanoliter osmometer additionally allowed us to test the recrystallization inhibition of IBPs(5, 13). In general, recrystallization is a phenomenon in which large crystals grow larger at the expense of small crystals. IBPs efficiently inhibit recrystallization, even at low concentrations(14, 15). We used our LabVIEW-controlled osmometer to quantitatively follow the recrystallization of ice and to enforce a constant ice fraction using simultaneous real-time video analysis of the images and temperature feedback from the sample chamber(13). The real-time calculations offer additional control options during an experimental procedure. A stage for an inverted microscope was developed to accommodate temperature-controlled microfluidic devices, which will be described elsewhere(16). The Cold Stage System The cold stage assembly (Figure 2) consists of a set of thermoelectric coolers that cool a copper plate. Heat is removed from the stage by flowing cold water through a closed compartment under the thermoelectric coolers. A 4 mm diameter hole in the middle of the copper plate serves as a viewing window. A 1 mm diameter in-plane hole was drilled to fit the thermistor. A custom-made copper disc (7 mm in diameter) with several holes (500 μm in diameter) was placed on the copper plate and aligned with the viewing window. Air was pumped at a flow rate of 35 ml/sec and dried using Drierite (W.A. Hammond). The dry air was used to ensure a dry environment at the cooling stage. The stage was connected via a 9 pin connection outlet to a temperature controller (Model 3040 or 3150, Newport Corporation, Irvine, California, US). The temperature controller was connected via a cable to a computer GPIB-PCI card (National instruments, Austin, Texas, USA).

摘要

冰结合蛋白(IBPs),包括抗冻蛋白、冰结构蛋白、热滞蛋白和冰重结晶抑制蛋白,存在于适应寒冷的生物体中,并通过与冰晶相互作用来保护它们免受冷冻伤害。IBPs存在于多种生物体中,包括鱼类(1)、植物(2,3)、节肢动物(4,5)、真菌(6)和细菌(7)。IBPs吸附在冰晶表面,阻止水分子在IBP吸附位置加入冰晶格。在吸附的IBPs之间的晶体表面上生长的冰会形成高曲率,这会降低冰晶生长的温度,这种现象称为吉布斯-汤姆逊效应。这种降低在熔点和非平衡冰点之间产生了一个间隙(热滞,TH),在这个间隙内冰的生长会停止(8-10),见图1。IBP研究中使用的主要工具之一是纳升渗透压计,它有助于测量IBP溶液的TH活性。纳升渗透压计,如克利夫顿仪器(Clifton Technical Physics,纽约州哈特福德)和奥塔哥仪器(Otago Osmometers,新西兰达尼丁),旨在通过测量纳升体积液滴的熔点降低来测量溶液的渗透压。这些设备被用于测量生物样品的渗透压,如眼泪(11),并被发现对IBP研究有用。对这些纳升渗透压计的手动控制限制了实验的可能性。温度变化率无法可靠控制,克利夫顿仪器的温度范围限制在4000 mOsmol(约-7.5°C),并且这些仪器无法提供随时间变化的温度记录选项。我们使用LabVIEW平台(美国国家仪器公司)设计了一个定制的计算机控制纳升渗透压计系统。如前所述(9,10),冷台包含一个金属块,水在其中循环,从而起到散热器的作用,见图2。连接到这个金属块的是热电冷却器,可以使用一个可通过LabVIEW模块控制的商用温度控制器来驱动,见图3。下面将提供更多细节。该系统的主要优点是其灵敏的温度控制,见图4。自动化温度控制允许将固定的温度斜坡与包含其他实验细节的视频显微镜输出进行协调。为了研究TH活性的时间依赖性,我们测试了来自南极细菌滨海莫拉氏菌(Marinomonas primoryensis)的一种58 kDa的高活性IBP(MpIBP)(12)。在彼得·戴维斯团队(皇后大学)开发的构建体中,这种蛋白质用增强型绿色荧光蛋白(eGFP)进行了标记(10)。我们表明温度变化曲线会影响TH活性。在这些实验中对温度曲线的出色控制显著改善了TH测量。纳升渗透压计还使我们能够测试IBPs的重结晶抑制作用(5,13)。一般来说,重结晶是一种大晶体以小晶体为代价生长得更大的现象。IBPs即使在低浓度下也能有效抑制重结晶(14,15)。我们使用我们的LabVIEW控制的渗透压计通过对图像的实时视频分析和样品室的温度反馈来定量跟踪冰的重结晶,并保持恒定的冰分数(13)。实时计算在实验过程中提供了额外的控制选项。开发了一个用于倒置显微镜的载物台,以容纳温度控制的微流控设备,其将在其他地方进行描述(16)。冷台系统 冷台组件(图2)由一组冷却铜板的热电冷却器组成。通过在热电冷却器下方的封闭隔层中流动冷水来从冷台移除热量。铜板中间一个4毫米直径的孔用作观察窗口。钻了一个1毫米直径的平面内孔以安装热敏电阻。一个带有几个孔(500微米直径)的定制铜盘(7毫米直径)放置在铜板上并与观察窗口对齐。以35毫升/秒的流速泵送空气并用干燥剂(W.A. Hammond)进行干燥。干燥空气用于确保冷却阶段的干燥环境。冷台通过一个9针连接插座连接到一个温度控制器(型号3040或3150,美国加利福尼亚州欧文市纽波特公司)。温度控制器通过电缆连接到计算机GPIB-PCI卡(美国得克萨斯州奥斯汀市美国国家仪器公司)。

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Microfluidic experiments reveal that antifreeze proteins bound to ice crystals suffice to prevent their growth.微流控实验表明,与冰晶结合的抗冻蛋白足以防止其生长。
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冰结合蛋白活性的宽温度范围。
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