Carlier Alexis, Dandrifosse Sébastien, Dumont Benjamin, Mercatoris Benoît
Biosystems Dynamics and Exchanges, TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, University of Liège, 5030 Gembloux, Belgium.
Plant Sciences, TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, University of Liège, 5030 Gembloux, Belgium.
Plant Phenomics. 2022 Jan 28;2022:9841985. doi: 10.34133/2022/9841985. eCollection 2022.
The automatic segmentation of ears in wheat canopy images is an important step to measure ear density or extract relevant plant traits separately for the different organs. Recent deep learning algorithms appear as promising tools to accurately detect ears in a wide diversity of conditions. However, they remain complicated to implement and necessitate a huge training database. This paper is aimed at proposing an easy and quick to train and robust alternative to segment wheat ears from heading to maturity growth stage. The tested method was based on superpixel classification exploiting features from RGB and multispectral cameras. Three classifiers were trained with wheat images acquired from heading to maturity on two cultivars at different levels of fertilizer. The best classifier, the support vector machine (SVM), yielded satisfactory segmentation and reached 94% accuracy. However, the segmentation at the pixel level could not be assessed only by the superpixel classification accuracy. For this reason, a second assessment method was proposed to consider the entire process. A simple graphical tool was developed to annotate pixels. The strategy was to annotate a few pixels per image to be able to quickly annotate the entire image set, and thus account for very diverse conditions. Results showed a lesser segmentation score (F1-score) for the heading and flowering stages and for the zero nitrogen input object. The methodology appeared appropriate for further work on the growth dynamics of the different wheat organs and in the frame of other segmentation challenges.
在小麦冠层图像中自动分割麦穗是测量穗密度或分别提取不同器官相关植物性状的重要步骤。最近的深度学习算法似乎是在各种条件下准确检测麦穗的有前途的工具。然而,它们的实施仍然很复杂,并且需要大量的训练数据库。本文旨在提出一种易于训练、快速且强大的替代方法,用于从小麦抽穗到成熟生长阶段分割麦穗。所测试的方法基于利用RGB和多光谱相机特征的超像素分类。使用在不同施肥水平下两个品种从小麦抽穗到成熟阶段采集的小麦图像训练了三个分类器。最佳分类器支持向量机(SVM)产生了令人满意的分割效果,准确率达到了94%。然而,仅通过超像素分类准确率无法评估像素级别的分割。因此,提出了第二种评估方法来考虑整个过程。开发了一个简单的图形工具来标注像素。策略是每张图像标注几个像素,以便能够快速标注整个图像集,从而考虑到非常多样的条件。结果表明,抽穗期和开花期以及零氮输入对象的分割得分(F1得分)较低。该方法似乎适用于进一步研究不同小麦器官的生长动态以及应对其他分割挑战。