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肠杆菌科中一株含- harboring 完整质粒基因组的系统发育比较和特征分析。

Phylogenetic Comparison and Characterization of an -Harboring Complete Plasmid Genome Isolated from Enterobacteriaceae.

机构信息

Division of Antimicrobial Resistance Research, Center for Infectious Disease Research, National Institute of Infectious Diseases, Korea National Institute of Health, Cheongju, Republic of Korea.

Center for One Health, College of Veterinary Medicine, Konkuk University, Gwangjin-gu, Seoul, Republic of Korea.

出版信息

Microb Drug Resist. 2022 Apr;28(4):492-497. doi: 10.1089/mdr.2021.0164. Epub 2022 Feb 18.

Abstract

Global dissemination of mobilized colistin resistance ()-carrying plasmids has been reported. This study aimed to investigate the global dissemination of these plasmids using whole genome sequencing to provide better understanding on genetic characteristics. Sixty-seven complete plasmid genomes harboring were obtained. Phylogeny was built against full plasmid genomes. Different replicon types of plasmid were compared in terms of antimicrobial resistance genes (ARGs), insertion sequence, and other functional genes. Five different replicon types of plasmid (IncX4, IncI2, IncP1, IncHIA, and IncFIB) were found to harbor . IncX4 and IncI2 types of plasmid were well clustered in accordance with the country where they were isolated (and not as IncHIA and IncFIB). Three insertion sequences (IS, IS, and IS) were identified in up- and/or downstream of . Plasmids IncX4 and IncI2 were observed across the sample origin. Plasmids IncX4 showed high uniformity regardless of the origin of isolates and harbored H-NS coding genes, a facilitator for successful plasmid transfer. All three insertion sequences were observed in IncI2 plasmids. IncHI2 plasmids harbored various ARGs in addition to . Our results elucidate the characteristics and phylogenetic relationships of complete harboring plasmids, indicating that global dissemination of is primarily owing to plasmid transfer rather than clonal spread.

摘要

已报道多黏菌素耐药基因 ()- 携带质粒在全球范围内的传播。本研究旨在通过全基因组测序来调查这些质粒的全球传播情况,以便更好地了解其遗传特征。获得了 67 个携带 的完整质粒基因组。基于全质粒基因组构建了系统发育树。比较了不同复制子类型的质粒在抗微生物药物耐药基因 (ARGs)、插入序列和其他功能基因方面的差异。发现 5 种不同的质粒复制子类型(IncX4、IncI2、IncP1、IncHIA 和 IncFIB)携带 。IncX4 和 IncI2 型质粒根据其分离所在国家聚类良好(而不是 IncHIA 和 IncFIB 型)。在 的上下游鉴定出 3 个插入序列(IS、IS 和 IS)。IncX4 和 IncI2 质粒在样本来源中均有观察到。IncX4 质粒无论分离株的来源如何,都具有高度的均一性,并携带 H-NS 编码基因,这是质粒成功转移的促进因素。所有 3 个插入序列都在 IncI2 质粒中观察到。IncHI2 质粒除了 之外还携带各种 ARGs。我们的研究结果阐明了携带 的完整质粒的特征和系统发育关系,表明 的全球传播主要是由于质粒的转移而不是克隆传播。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5c5/9058865/54a73cd19c5b/mdr.2021.0164_figure1.jpg

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