Rangamaran Vijaya Raghavan, Sankara Subramanian Sai H, Balachandran Karpaga Raja Sundari, Gopal Dharani
Marine Biotechnology Division, Ocean Science and Technology for Islands Group, National Institute of Ocean Technology (NIOT), Ministry of Earth Sciences (MoES), Government of India, Pallikaranai, Chennai, 600100, India.
Microb Ecol. 2023 Feb;85(2):357-371. doi: 10.1007/s00248-021-01952-z. Epub 2022 Feb 23.
Arabian Sea harbours one of the largest oxygen minimal zones (OMZs) among the global oceans wherein biogeochemical cycles are regulated through dominant and complex microbial processes. The present study investigated the bacterial communities at various depths of the Arabian Sea OMZ using high-throughput sequencing of the v3-v4 hyper variable region of 16S rRNA gene. A total of 10 samples which included water samples from 8 different depths and 2 sediment samples were analyzed in this study. About 2.7 million sequences were obtained from all the samples. The sequence analysis revealed high bacterial diversity at deep waters and sediment samples and comparatively less species richness at the core OMZ depths. Number of OTUs ranged from 114 to 14441.Taxonomic assignments of the obtained OTUs showed dominant presence of Proteobacteria, Bacteriodetes, and Chloroflexi across all the samples. The identified OTUs were further affiliated to the phyla Marinimicrobia, Colwellia, Nitrospina, Tepidicaulis, Shewanella, Pseudoalteromonas, Woeseia at various depths along the water column. Correlation with abiotic factors suggested distinct variation in bacterial community composition with change in depth and dissolved oxygen (DO) levels. Predictive functional annotation based on bacterial phylotypes suggested presence of active nitrogen, sulphur, carbon, and methane metabolic cycles along the vertical transect of the studied region. Presence of nitrogen reduction bacterial group below the core OMZ depths may potentially provide insight into the expansion of OMZ region in Arabian Sea. Functional profiling further revealed presence of genes related to xenobiotic degradation in the water and sediment samples indicating a potential hotspot for bio-prospection.
阿拉伯海是全球海洋中最大的氧含量最低区域(OMZ)之一,其生物地球化学循环通过主要且复杂的微生物过程进行调节。本研究利用16S rRNA基因v3 - v4高变区的高通量测序技术,对阿拉伯海氧含量最低区域不同深度的细菌群落进行了调查。本研究共分析了10个样本,其中包括来自8个不同深度的水样和2个沉积物样本。所有样本共获得约270万个序列。序列分析显示,深水和沉积物样本中的细菌多样性较高,而在氧含量最低区域核心深度的物种丰富度相对较低。操作分类单元(OTU)的数量在114至14441之间。对所得OTU的分类学分析表明,所有样本中变形菌门、拟杆菌门和绿弯菌门占主导地位。在水柱不同深度,已鉴定的OTU进一步隶属于Marinimicrobia、科尔韦氏菌属、硝化刺菌属、嗜温茎菌属、希瓦氏菌属、假交替单胞菌属、沃氏菌属等门类。与非生物因素的相关性表明,细菌群落组成随深度和溶解氧(DO)水平的变化存在明显差异。基于细菌系统型的预测功能注释表明,在所研究区域的垂直断面中存在活跃的氮、硫、碳和甲烷代谢循环。在氧含量最低区域核心深度以下存在氮还原细菌群,这可能为深入了解阿拉伯海氧含量最低区域的扩展提供线索。功能分析进一步揭示,水和沉积物样本中存在与外源生物降解相关的基因,表明该区域可能是生物勘探的潜在热点。