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使用全外显子组测序在黎巴嫩人群中鉴定自闭症谱系障碍的新型基因变异。

Identification of Novel Gene Variants for Autism Spectrum Disorders in the Lebanese Population Using Whole-Exome Sequencing.

机构信息

Department of Biology, Faculty of Arts and Sciences, Holy Spirit University of Kaslik, Jounieh P.O. Box 446, Lebanon.

UMR 1253 iBrain, Inserm, Faculté de Médecine, Université de Tours, CEDEX 1, 37032 Tours, France.

出版信息

Genes (Basel). 2022 Jan 21;13(2):186. doi: 10.3390/genes13020186.

Abstract

In our previous study, in which array CGH was used on 19 Lebanese ASD subjects and their parents, we identified rare copy number variants (CNVs) in 14 subjects. The five remaining subjects did not show any CNVs related to autism spectrum disorders (ASD). In the present complementary study, we applied whole-exome sequencing (WES), which allows the identification of rare genetic variations such as single nucleotide variations and small insertions/deletions, to the five negative CNV subjects. After stringent filtering of initial data on the five families, three novel genes potentially related to neurodevelopment were identified, including a mutation in the gene. In addition, genes already known to be related to ASD contained sequence variations. Our findings outline the potential involvement of the novel mutation in the gene in the genetic etiology and pathophysiology of ASD and highlights the genetic complexity of these disorders. Further studies with larger cohorts of subjects are needed to confirm these observations, and functional analyses need to be performed to understand the precise pathophysiology in these cases.

摘要

在我们之前的研究中,我们使用 array CGH 对 19 名黎巴嫩 ASD 患者及其父母进行了研究,在 14 名患者中发现了罕见的拷贝数变异(CNVs)。其余 5 名患者没有显示与自闭症谱系障碍(ASD)相关的任何 CNVs。在本补充研究中,我们应用了全外显子组测序(WES),该技术可以识别罕见的遗传变异,如单核苷酸变异和小插入/缺失,对 5 名 CNV 阴性患者进行了研究。在对这五个家庭的初始数据进行严格过滤后,确定了三个可能与神经发育相关的新基因,包括 基因中的一个 突变。此外,还发现了与 ASD 相关的已知基因的序列变异。我们的研究结果表明,新型 基因中的 突变可能参与了 ASD 的遗传病因和病理生理学,并强调了这些疾病的遗传复杂性。需要进一步的研究,对更大的患者队列进行研究,以证实这些观察结果,并进行功能分析,以了解这些病例的确切病理生理学。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b9d/8871811/2517469e12ee/genes-13-00186-g001.jpg

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