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Mechanistic Origin of Cell-Size Control and Homeostasis in Bacteria.细菌中细胞大小控制和动态平衡的机制起源。
Curr Biol. 2019 Jun 3;29(11):1760-1770.e7. doi: 10.1016/j.cub.2019.04.062. Epub 2019 May 16.
2
Size control in mammalian cells involves modulation of both growth rate and cell cycle duration.哺乳动物细胞的大小控制涉及生长速度和细胞周期持续时间的调节。
Nat Commun. 2018 Aug 16;9(1):3275. doi: 10.1038/s41467-018-05393-0.
3
The Effects of Stochasticity at the Single-Cell Level and Cell Size Control on the Population Growth.单细胞水平的随机性和细胞大小控制对种群增长的影响。
Cell Syst. 2017 Oct 25;5(4):358-367.e4. doi: 10.1016/j.cels.2017.08.015. Epub 2017 Oct 4.
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The Adder Phenomenon Emerges from Independent Control of Pre- and Post-Start Phases of the Budding Yeast Cell Cycle.“Adder 现象源于出芽酵母细胞周期的起始前期和起始后期的独立控制。”
Curr Biol. 2017 Sep 25;27(18):2774-2783.e3. doi: 10.1016/j.cub.2017.08.015. Epub 2017 Sep 7.
5
A simple molecular mechanism explains multiple patterns of cell-size regulation.一种简单的分子机制解释了细胞大小调控的多种模式。
PLoS One. 2017 Aug 16;12(8):e0182633. doi: 10.1371/journal.pone.0182633. eCollection 2017.
6
Analysis of Noise Mechanisms in Cell-Size Control.细胞大小控制中的噪声机制分析
Biophys J. 2017 Jun 6;112(11):2408-2418. doi: 10.1016/j.bpj.2017.04.050.
7
The Synchronization of Replication and Division Cycles in Individual E. coli Cells.单个大肠杆菌细胞中复制与分裂周期的同步
Cell. 2016 Jul 28;166(3):729-739. doi: 10.1016/j.cell.2016.06.052.
8
A Hierarchical Kinetic Theory of Birth, Death and Fission in Age-Structured Interacting Populations.年龄结构相互作用种群中出生、死亡和裂变的分层动力学理论。
J Stat Phys. 2016;164:49-76. doi: 10.1007/s10955-016-1524-x. Epub 2016 May 14.
9
Kinetic theory of age-structured stochastic birth-death processes.具有年龄结构的随机生灭过程的动力学理论。
Phys Rev E. 2016 Jan;93(1):012112. doi: 10.1103/PhysRevE.93.012112. Epub 2016 Jan 11.
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Cell-size control and homeostasis in bacteria.细菌中的细胞大小控制与稳态
Curr Biol. 2015 Feb 2;25(3):385-391. doi: 10.1016/j.cub.2014.12.009. Epub 2014 Dec 24.

细胞增殖中加法器机制的偏微分方程模型

PDE MODELS OF ADDER MECHANISMS IN CELLULAR PROLIFERATION.

作者信息

Xia Mingtao, Greenman Chris D, Chou Tom

机构信息

Department of Mathematics, UCLA, Los Angeles, CA 90095-1555.

School of Computing Sciences, University of East Anglia, Norwich, UK NR4 7TJ.

出版信息

SIAM J Appl Math. 2020;80(3):1307-1335. doi: 10.1137/19M1246754.

DOI:10.1137/19M1246754
PMID:35221385
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8871769/
Abstract

Cell division is a process that involves many biochemical steps and complex biophysical mechanisms. To simplify the understanding of what triggers cell division, three basic models that subsume more microscopic cellular processes associated with cell division have been proposed. Cells can divide based on the time elapsed since their birth, their size, and/or the volume added since their birth-the timer, sizer, and adder models, respectively. Here, we propose unified adder-sizer models and investigate some of the properties of different adder processes arising in cellular proliferation. Although the adder-sizer model provides a direct way to model cell population structure, we illustrate how it is mathematically related to the well-known model in which cell division depends on age and size. Existence and uniqueness of weak solutions to our 2+1-dimensional PDE model are proved, leading to the convergence of the discretized numerical solutions and allowing us to numerically compute the dynamics of cell population densities. We then generalize our PDE model to incorporate recent experimental findings of a system exhibiting mother-daughter correlations in cellular growth rates. Numerical experiments illustrating possible average cell volume blowup and the dynamical behavior of cell populations with mother-daughter correlated growth rates are carried out. Finally, motivated by new experimental findings, we extend our adder model cases where the controlling variable is the added size between DNA replication initiation points in the cell cycle.

摘要

细胞分裂是一个涉及许多生化步骤和复杂生物物理机制的过程。为了简化对触发细胞分裂因素的理解,人们提出了三种基本模型,这些模型涵盖了与细胞分裂相关的更多微观细胞过程。细胞可以分别根据自其诞生以来经过的时间、其大小和/或自其诞生以来增加的体积进行分裂,即定时器模型、大小模型和加法器模型。在这里,我们提出统一的加法器 - 大小模型,并研究细胞增殖过程中出现的不同加法器过程的一些特性。尽管加法器 - 大小模型提供了一种直接对细胞群体结构进行建模的方法,但我们说明了它在数学上如何与细胞分裂取决于年龄和大小的著名模型相关联。我们证明了二维偏微分方程(PDE)模型弱解的存在性和唯一性,这导致离散数值解的收敛,并使我们能够数值计算细胞群体密度的动态变化。然后,我们将偏微分方程模型进行推广,以纳入最近关于一个在细胞生长速率上表现出母女相关性的系统的实验结果。我们进行了数值实验,展示了可能的平均细胞体积爆炸以及具有母女相关生长速率的细胞群体的动态行为。最后,受新实验结果的启发,我们扩展了加法器模型的情况,其中控制变量是细胞周期中DNA复制起始点之间增加的大小。