Xia Mingtao, Greenman Chris D, Chou Tom
Department of Mathematics, UCLA, Los Angeles, CA 90095-1555.
School of Computing Sciences, University of East Anglia, Norwich, UK NR4 7TJ.
SIAM J Appl Math. 2020;80(3):1307-1335. doi: 10.1137/19M1246754.
Cell division is a process that involves many biochemical steps and complex biophysical mechanisms. To simplify the understanding of what triggers cell division, three basic models that subsume more microscopic cellular processes associated with cell division have been proposed. Cells can divide based on the time elapsed since their birth, their size, and/or the volume added since their birth-the timer, sizer, and adder models, respectively. Here, we propose unified adder-sizer models and investigate some of the properties of different adder processes arising in cellular proliferation. Although the adder-sizer model provides a direct way to model cell population structure, we illustrate how it is mathematically related to the well-known model in which cell division depends on age and size. Existence and uniqueness of weak solutions to our 2+1-dimensional PDE model are proved, leading to the convergence of the discretized numerical solutions and allowing us to numerically compute the dynamics of cell population densities. We then generalize our PDE model to incorporate recent experimental findings of a system exhibiting mother-daughter correlations in cellular growth rates. Numerical experiments illustrating possible average cell volume blowup and the dynamical behavior of cell populations with mother-daughter correlated growth rates are carried out. Finally, motivated by new experimental findings, we extend our adder model cases where the controlling variable is the added size between DNA replication initiation points in the cell cycle.
细胞分裂是一个涉及许多生化步骤和复杂生物物理机制的过程。为了简化对触发细胞分裂因素的理解,人们提出了三种基本模型,这些模型涵盖了与细胞分裂相关的更多微观细胞过程。细胞可以分别根据自其诞生以来经过的时间、其大小和/或自其诞生以来增加的体积进行分裂,即定时器模型、大小模型和加法器模型。在这里,我们提出统一的加法器 - 大小模型,并研究细胞增殖过程中出现的不同加法器过程的一些特性。尽管加法器 - 大小模型提供了一种直接对细胞群体结构进行建模的方法,但我们说明了它在数学上如何与细胞分裂取决于年龄和大小的著名模型相关联。我们证明了二维偏微分方程(PDE)模型弱解的存在性和唯一性,这导致离散数值解的收敛,并使我们能够数值计算细胞群体密度的动态变化。然后,我们将偏微分方程模型进行推广,以纳入最近关于一个在细胞生长速率上表现出母女相关性的系统的实验结果。我们进行了数值实验,展示了可能的平均细胞体积爆炸以及具有母女相关生长速率的细胞群体的动态行为。最后,受新实验结果的启发,我们扩展了加法器模型的情况,其中控制变量是细胞周期中DNA复制起始点之间增加的大小。