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通过B细胞受体组的下一代测序分析COVID-19患者中趋同IGH特征与疾病严重程度的关系

The Relationship Between Convergent IGH Signatures and Severity of COVID-19 Patients by Next-Generation Sequencing of B-Cell Repertoire.

作者信息

Cai Hongliu, Hu Juan, Huang Lingtong, Gao Chunhua, Xu Mi, Gao Yuzhi, Sun Tao, Fang Xueling

机构信息

Department of Critical Care Units, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China.

Zhejiang California International NanoSystems Institute, Zhejiang University, Hangzhou, China.

出版信息

Front Microbiol. 2022 Feb 9;12:833054. doi: 10.3389/fmicb.2021.833054. eCollection 2021.

Abstract

OBJECT

To reveal convergent IGH signatures and the association with severity of coronavirus disease 2019 (COVID-19) patients.

METHOD

A total of 25 COVID-19 inpatients were classified into three clinical conditions: mild, severe, and critical. We analyzed convergent IGH signatures by ImmuHub B-cell receptor (BCR) profiling system.

RESULTS

IGH singleton frequency in patients is significantly lower than that of healthy donors (HDs). The clonality index of IGH in patients is significantly higher than that in HDs. Nevertheless, no significant difference was observed among the three groups. The difference in IGH clonality (top five clones) between post- and pretreatment was significant in the improvement and deterioration groups. Three common public motifs were shared by all COVID-19 patients: ARDYGG, RWYFDY, and YYYYGMDV.

CONCLUSION

B cells could recognize severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and produce clonal expansion. Patients who had better outcomes after treatment had higher IGH clonality. Three common public motifs-ARDYGG, RWYFDY, and YYYYGMDV-might be used for vaccine development (ChiCTR2000029626).

摘要

目的

揭示2019冠状病毒病(COVID-19)患者的趋同IGH特征及其与疾病严重程度的关联。

方法

将25例COVID-19住院患者分为轻度、重度和危重症三种临床状态。我们通过ImmuHub B细胞受体(BCR)分析系统分析趋同IGH特征。

结果

患者的IGH单例频率显著低于健康供者(HDs)。患者IGH的克隆性指数显著高于HDs。然而,三组之间未观察到显著差异。改善组和恶化组治疗前后IGH克隆性(前五个克隆)的差异显著。所有COVID-19患者共有三个常见的公共基序:ARDYGG、RWYFDY和YYYYGMDV。

结论

B细胞可识别严重急性呼吸综合征冠状病毒2(SARS-CoV-2)并产生克隆性扩增。治疗后预后较好的患者IGH克隆性较高。三个常见的公共基序——ARDYGG、RWYFDY和YYYYGMDV——可能用于疫苗研发(ChiCTR2000029626)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c51f/8865457/fdede3c508ee/fmicb-12-833054-g001.jpg

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