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DOCK6 基因罕见变异导致 SQSTM1 基因 p.Pro392Leu 突变,与 Pagets 骨病的临床和破骨细胞表型减弱相关。

Attenuated clinical and osteoclastic phenotypes of Paget's disease of bone linked to the p.Pro392Leu/SQSTM1 mutation by a rare variant in the DOCK6 gene.

机构信息

CHU de Québec-Université Laval Research Centre, Quebec City, QC, Canada.

Institut de Biologie Intégrative Et Des Systèmes (IBIS), Université Laval, Quebec, QC, Canada.

出版信息

BMC Med Genomics. 2022 Mar 3;15(1):41. doi: 10.1186/s12920-022-01198-9.

Abstract

BACKGROUND

We identified two families with Paget's disease of bone (PDB) linked to the p.Pro392Leu mutation within the SQSTM1 gene displaying a possible digenism. This study aimed at identifying this second genetic variant cosegregating with the p.Pro392Leu mutation and at characterizing its impact on the clinical and cellular phenotypes of PDB.

METHODS

Whole exome sequencing was performed in one patient per family and two healthy controls. We compared clinical characteristics of PDB in 14 relatives from the two families. The osteoclastic phenotype was compared in in vitro differentiated osteoclasts from 31 participants carrying the DOCK6 and/or SQSTM1 variants. Tridimensional models of SQSTM1 and DOCK6 proteins were generated to evaluate the impact of these variants on their stability and flexibility. Statistical analyses were performed with Graphpad prism.

RESULTS

Whole-exome sequencing allowed us to identify the p.Val45Ile missense variant in the DOCK6 gene in patients. In both families, the mean age at PDB diagnosis was delayed in pagetic patients carrier of the p.Val45Ile variant alone compared to those carrying the p.Pro392Leu mutation alone (67 vs. 44 years, P = 0.03). Although both p.Val45Ile and p.Pro392Leu variants gave rise to a pagetic phenotype of osteoclast versus healthy controls, the p.Val45Ile variant was found to attenuate the severity of the osteoclastic phenotype of PDB caused by the p.Pro392Leu mutation when both variants were present. The DOCK6 mRNA expression was higher in carriers of the p.Val45Ile variant than in pagetic patients without any mutations and healthy controls. Structural bioinformatics analyses suggested that the p.Pro392Leu mutation might rigidify the UBA domain and thus decrease its possible intramolecular interaction with a novel domain, the serum response factor-transcription factor (SRF-TF)-like domain, whereas the p.Val45Ile variant may decrease SRF-TF-like activity.

CONCLUSION

The p.Val45Ile variant may attenuate the severity of the clinical phenotype of PDB in patient carriers of both variants. In vitro, the rare variant of the DOCK6 may have a modifier effect on the p.Pro392Leu mutation, possibly via its effect on the SRF-TF-like.

摘要

背景

我们发现了两个与 SQSTM1 基因中的 p.Pro392Leu 突变相关的骨骼佩吉特病(PDB)家族,该突变可能存在二基因遗传。本研究旨在鉴定与 p.Pro392Leu 突变共分离的第二种遗传变异体,并表征其对 PDB 临床和细胞表型的影响。

方法

对每个家族中的一名患者和两名健康对照者进行全外显子组测序。我们比较了来自这两个家族的 14 名亲属的 PDB 临床特征。在来自携带 DOCK6 和/或 SQSTM1 变异体的 31 名参与者的体外分化破骨细胞中比较破骨细胞表型。生成 SQSTM1 和 DOCK6 蛋白的三维模型,以评估这些变异体对其稳定性和灵活性的影响。使用 Graphpad prism 进行统计分析。

结果

全外显子组测序使我们能够在患者中鉴定出 DOCK6 基因中的 p.Val45Ile 错义变异体。在两个家族中,与仅携带 p.Pro392Leu 突变的 pagetic 患者相比,仅携带 p.Val45Ile 变异体的 pagetic 患者的 PDB 诊断年龄延迟(67 岁 vs. 44 岁,P = 0.03)。尽管 p.Val45Ile 和 p.Pro392Leu 变异体均导致破骨细胞相对于健康对照者的 pagetic 表型,但当两种变异体均存在时,p.Val45Ile 变异体被发现可减轻由 p.Pro392Leu 突变引起的 PDB 破骨细胞表型的严重程度。与无突变的 pagetic 患者和健康对照者相比,携带 p.Val45Ile 变异体的 DOCK6 mRNA 表达更高。结构生物信息学分析表明,p.Pro392Leu 突变可能使 UBA 结构域僵化,从而减少其与新结构域(血清反应因子-转录因子(SRF-TF)样结构域)的可能分子内相互作用,而 p.Val45Ile 变异体可能降低 SRF-TF 样活性。

结论

在携带两种变异体的患者中,p.Val45Ile 变异体可能减轻 PDB 临床表型的严重程度。在体外,DOCK6 的罕见变异体可能通过对 SRF-TF 样结构域的影响,对 p.Pro392Leu 突变具有修饰作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbdf/8895793/fc748b6355e8/12920_2022_1198_Fig1_HTML.jpg

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