• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

构建与膀胱尿路上皮癌进展相关的lncRNA和mRNA共表达网络。

Construction of a Co-Expression Network for lncRNAs and mRNAs Related to Urothelial Carcinoma of the Bladder Progression.

作者信息

Mao Yeqing, Wen Chao, Yang Zitong

机构信息

Urology Department, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China.

Medical College, Zhejiang University, Hangzhou, China.

出版信息

Front Oncol. 2022 Feb 25;12:835074. doi: 10.3389/fonc.2022.835074. eCollection 2022.

DOI:10.3389/fonc.2022.835074
PMID:35280820
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8913900/
Abstract

Carcinoma of urinary bladder is the most familiar cancer of the urinary tract, with the highest incidence in men. However, its prognosis and treatment have not improved significantly in the last 30 years. The main reason for this may be related to the alteration and regulation of genes. These alterations in genes that play a crucial role in cell cycle regulation may result in high-grade tumors and may alter drug sensitivity. Notably, the role of lncRNA in bladder cancer, especially the lncRNA-mRNA regulatory network, has not been fully elucidated. In this manuscript, we compared RNA sequencing (RNA-seq) data from 19 normal bladder tissues and 411 primary bladder tumor tissues using The Cancer Genome Atlas (TCGA) data bank, subjected differentially expressed mRNAs and lncRNAs to weighted gene co-expression network analysis, and screened out modules highly correlated with tumor progression. Subsequently, a lncRNA-mRNA co-expression network was built, and two key mRNAs were identified COX regression analysis. Kaplan-Meier curve analysis revealed that the overall survival of sick people in the high-risk section was significantly shorter than those in the low-risk section. Therefore, this lncRNA-mRNA-based co-expression pattern may be used clinically to predict the prognosis of carcinoma of urinary bladder people. Our study not only provides a genetic target for carcinoma of urinary bladder therapy but also provides new ideas for people in the medical profession to discover the treatment of various tumors.

摘要

膀胱癌是泌尿系统最常见的癌症,男性发病率最高。然而,在过去30年里,其预后和治疗并未显著改善。主要原因可能与基因的改变和调控有关。这些在细胞周期调控中起关键作用的基因改变可能导致高级别肿瘤,并可能改变药物敏感性。值得注意的是,lncRNA在膀胱癌中的作用,尤其是lncRNA - mRNA调控网络,尚未完全阐明。在本手稿中,我们使用癌症基因组图谱(TCGA)数据库比较了19个正常膀胱组织和411个原发性膀胱肿瘤组织的RNA测序(RNA-seq)数据,对差异表达的mRNA和lncRNA进行加权基因共表达网络分析,并筛选出与肿瘤进展高度相关的模块。随后,构建了lncRNA - mRNA共表达网络,并通过COX回归分析鉴定出两个关键mRNA。Kaplan-Meier曲线分析显示,高危组患者的总生存期明显短于低危组。因此,这种基于lncRNA - mRNA的共表达模式可用于临床预测膀胱癌患者的预后。我们的研究不仅为膀胱癌治疗提供了一个基因靶点,也为医学界人士发现各种肿瘤的治疗方法提供了新思路。

相似文献

1
Construction of a Co-Expression Network for lncRNAs and mRNAs Related to Urothelial Carcinoma of the Bladder Progression.构建与膀胱尿路上皮癌进展相关的lncRNA和mRNA共表达网络。
Front Oncol. 2022 Feb 25;12:835074. doi: 10.3389/fonc.2022.835074. eCollection 2022.
2
Excavating novel diagnostic and prognostic long non-coding RNAs (lncRNAs) for head and neck squamous cell carcinoma: an integrated bioinformatics analysis of competing endogenous RNAs (ceRNAs) and gene co-expression networks.挖掘新型诊断和预后长链非编码 RNA(lncRNA)对头颈鳞状细胞癌的作用:竞争性内源性 RNA(ceRNA)和基因共表达网络的综合生物信息学分析。
Bioengineered. 2021 Dec;12(2):12821-12838. doi: 10.1080/21655979.2021.2003925.
3
Development of a novel six-long noncoding RNA signature predicting survival of patients with bladder urothelial carcinoma.一种新型的六长非编码 RNA 标志物的开发,用于预测膀胱癌患者的生存情况。
J Cell Biochem. 2019 Dec;120(12):19796-19809. doi: 10.1002/jcb.29285. Epub 2019 Jul 24.
4
Genome-wide analysis of prognostic-related lncRNAs, miRNAs and mRNAs forming a competing endogenous RNA network in lung squamous cell carcinoma.肺鳞状细胞癌中预后相关 lncRNAs、miRNAs 和 mRNAs 形成竞争内源性 RNA 网络的全基因组分析。
J Cancer Res Clin Oncol. 2020 Jul;146(7):1711-1723. doi: 10.1007/s00432-020-03224-8. Epub 2020 Apr 30.
5
Construction of Competitive Endogenous RNA Network and Verification of 3-Key LncRNA Signature Associated With Distant Metastasis and Poor Prognosis in Patients With Clear Cell Renal Cell Carcinoma.透明细胞肾细胞癌患者中竞争性内源性RNA网络的构建及与远处转移和不良预后相关的3个关键长链非编码RNA特征的验证
Front Oncol. 2021 Mar 24;11:640150. doi: 10.3389/fonc.2021.640150. eCollection 2021.
6
MIR100HG Regulates CALD1 Gene Expression by Targeting miR-142-5p to Affect the Progression of Bladder Cancer Cells , as Revealed by Transcriptome Sequencing.转录组测序揭示,MIR100HG通过靶向miR-142-5p调控CALD1基因表达,影响膀胱癌细胞进展。
Front Mol Biosci. 2022 Jan 21;8:793493. doi: 10.3389/fmolb.2021.793493. eCollection 2021.
7
Identification of a tumor microenvironment-related seven-gene signature for predicting prognosis in bladder cancer.鉴定一个与肿瘤微环境相关的七基因标志物,用于预测膀胱癌的预后。
BMC Cancer. 2021 Jun 10;21(1):692. doi: 10.1186/s12885-021-08447-7.
8
Genome-Wide Analysis of Prognostic lncRNAs, miRNAs, and mRNAs Forming a Competing Endogenous RNA Network in Hepatocellular Carcinoma.肝细胞癌中构成竞争性内源RNA网络的预后性长链非编码RNA、微小RNA和信使RNA的全基因组分析
Cell Physiol Biochem. 2018;48(5):1953-1967. doi: 10.1159/000492519. Epub 2018 Aug 9.
9
Transcriptome analysis reveals the link between lncRNA-mRNA co-expression network and tumor immune microenvironment and overall survival in head and neck squamous cell carcinoma.转录组分析揭示长非编码 RNA-mRNA 共表达网络与头颈部鳞状细胞癌肿瘤免疫微环境和总生存期的关系。
BMC Med Genomics. 2020 Mar 30;13(1):57. doi: 10.1186/s12920-020-0707-0.
10
RNA-Sequencing Data Reveal a Prognostic Four-lncRNA-Based Risk Score for Bladder Urothelial Carcinoma: An in Silico Update.RNA测序数据揭示了一种基于四个长链非编码RNA的膀胱癌预后风险评分:一项计算机模拟更新。
Cell Physiol Biochem. 2018;50(4):1474-1495. doi: 10.1159/000494647. Epub 2018 Oct 25.

引用本文的文献

1
Effect of Curcumin on Hepatic mRNA and lncRNA Co-Expression in Heat-Stressed Laying Hens.姜黄素对热应激产蛋鸡肝组织 mRNA 和 lncRNA 共表达的影响。
Int J Mol Sci. 2024 May 15;25(10):5393. doi: 10.3390/ijms25105393.
2
Elevated galectin-3 levels detected in women with hyperglycemia during early and mid-pregnancy antagonizes high glucose - induced trophoblast cells apoptosis via galectin-3/foxc1 pathway.在妊娠早期和中期,检测到患有高血糖的女性的半乳糖凝集素-3 水平升高,通过半乳糖凝集素-3/foxc1 途径拮抗高葡萄糖诱导的滋养细胞凋亡。
Mol Med. 2023 Aug 25;29(1):115. doi: 10.1186/s10020-023-00707-5.
3
Integrated risk scores from N6-methyladenosine-related lncRNAs are potential biomarkers for predicting the overall survival of bladder cancer patients.

本文引用的文献

1
Identification of a Ferroptosis-Related LncRNA Signature as a Novel Prognosis Model for Lung Adenocarcinoma.鉴定一种与铁死亡相关的长链非编码RNA特征作为肺腺癌的新型预后模型
Front Oncol. 2021 Jun 23;11:675545. doi: 10.3389/fonc.2021.675545. eCollection 2021.
2
Using lncRNA Sequencing to Reveal a Putative lncRNA-mRNA Correlation Network and the Potential Role of PCBP1-AS1 in the Pathogenesis of Cervical Cancer.利用长链非编码RNA测序揭示潜在的长链非编码RNA-信使核糖核酸关联网络以及PCBP1-AS1在宫颈癌发病机制中的潜在作用。
Front Oncol. 2021 Mar 23;11:634732. doi: 10.3389/fonc.2021.634732. eCollection 2021.
3
Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries.
来自N6-甲基腺嘌呤相关长链非编码RNA的综合风险评分是预测膀胱癌患者总生存期的潜在生物标志物。
Front Genet. 2022 Aug 17;13:906880. doi: 10.3389/fgene.2022.906880. eCollection 2022.
《全球癌症统计数据 2020:全球 185 个国家和地区 36 种癌症的发病率和死亡率估计》。
CA Cancer J Clin. 2021 May;71(3):209-249. doi: 10.3322/caac.21660. Epub 2021 Feb 4.
4
A novel three-long noncoding RNA risk score system for the prognostic prediction of triple-negative breast cancer.一种新型三长非编码 RNA 风险评分系统用于三阴性乳腺癌的预后预测。
Biomark Med. 2021 Jan;15(1):43-55. doi: 10.2217/bmm-2020-0505.
5
LncRNA PVT1 accelerates malignant phenotypes of bladder cancer cells by modulating miR-194-5p/BCLAF1 axis as a ceRNA.长链非编码 RNA PVT1 通过作为 ceRNA 调节 miR-194-5p/BCLAF1 轴来加速膀胱癌细胞的恶性表型。
Aging (Albany NY). 2020 Nov 16;12(21):22291-22312. doi: 10.18632/aging.202203.
6
Bioinformatic Identification of Hub Genes and Analysis of Prognostic Values in Colorectal Cancer.生物信息学鉴定结直肠癌的枢纽基因并分析其预后价值。
Nutr Cancer. 2021;73(11-12):2568-2578. doi: 10.1080/01635581.2020.1841249. Epub 2020 Nov 5.
7
CDK1, CCNB1, and CCNB2 are Prognostic Biomarkers and Correlated with Immune Infiltration in Hepatocellular Carcinoma.CDK1、CCNB1 和 CCNB2 是肝癌的预后生物标志物,并与免疫浸润相关。
Med Sci Monit. 2020 Aug 31;26:e925289. doi: 10.12659/MSM.925289.
8
To construct a ceRNA regulatory network as prognostic biomarkers for bladder cancer.构建 ceRNA 调控网络作为膀胱癌的预后生物标志物。
J Cell Mol Med. 2020 May;24(9):5375-5386. doi: 10.1111/jcmm.15193. Epub 2020 Mar 31.
9
WGCNA Co-Expression Network Analysis Reveals ILF3-AS1 Functions as a CeRNA to Regulate PTBP1 Expression by Sponging miR-29a in Gastric Cancer.加权基因共表达网络分析揭示ILF3-AS1作为竞争性内源RNA通过海绵吸附miR-29a调控胃癌中PTBP1的表达
Front Genet. 2020 Feb 14;11:39. doi: 10.3389/fgene.2020.00039. eCollection 2020.
10
Identification of the Key Factors Related to Bladder Cancer by lncRNA-miRNA-mRNA Three-Layer Network.基于lncRNA-miRNA-mRNA三层网络鉴定膀胱癌相关关键因素
Front Genet. 2020 Jan 28;10:1398. doi: 10.3389/fgene.2019.01398. eCollection 2019.