Institute of Theoretical Chemistry, Jilin University, Changchun, Jilin Province 130023, China.
Department of Chemistry, University of Texas, Austin, Texas 78712, USA.
J Chem Phys. 2022 Mar 14;156(10):104106. doi: 10.1063/5.0082969.
Vibrational spectroscopy is a useful technique for probing chemical environments. The development of models that can reproduce the spectra of nitriles and azides is valuable because these probes are uniquely suited for investigating complex systems. Empirical vibrational spectroscopic maps are commonly employed to obtain the instantaneous vibrational frequencies during molecular dynamics simulations but often fail to adequately describe the behavior of these probes, especially in its transferability to a diverse range of environments. In this paper, we demonstrate several reasons for the difficulty in constructing a general-purpose vibrational map for methyl thiocyanate (MeSCN), a model for cyanylated biological probes. In particular, we found that electrostatics alone are not a sufficient metric to categorize the environments of different solvents, and the dominant features in intermolecular interactions in the energy landscape vary from solvent to solvent. Consequently, common vibrational mapping schemes do not cover all essential interaction terms adequately, especially in the treatment of van der Waals interactions. Quantum vibrational perturbation (QVP) theory, along with a combined quantum mechanical and molecular mechanical potential for solute-solvent interactions, is an alternative and efficient modeling technique, which is compared in this paper, to yield spectroscopic results in good agreement with experimental FTIR. QVP has been used to analyze the computational data, revealing the shortcomings of the vibrational maps for MeSCN in different solvents. The results indicate that insights from QVP analysis can be used to enhance the transferability of vibrational maps in future studies.
振动光谱学是一种探测化学环境的有用技术。开发能够再现腈和叠氮化物光谱的模型非常有价值,因为这些探针非常适合研究复杂体系。经验振动光谱图通常用于在分子动力学模拟中获得分子的瞬时振动频率,但它们往往不能充分描述这些探针的行为,特别是在将其转移到各种环境时。在本文中,我们展示了为甲基硫氰酸酯(MeSCN)构建通用振动图谱的几个难点,MeSCN 是氰基化生物探针的模型。特别是,我们发现仅静电作用不足以对不同溶剂的环境进行分类,并且在能量景观中的分子间相互作用中的主要特征因溶剂而异。因此,常见的振动映射方案不能充分涵盖所有必要的相互作用项,特别是在处理范德华相互作用时。量子振动微扰(QVP)理论以及溶质-溶剂相互作用的量子力学和分子力学相结合的势能,是一种替代且高效的建模技术,本文将对其进行比较,以得出与实验 FTIR 吻合良好的光谱结果。QVP 已被用于分析计算数据,揭示了 MeSCN 在不同溶剂中的振动图谱的缺点。结果表明,从 QVP 分析中获得的见解可用于提高未来研究中振动图谱的可转移性。