Shirley Joseph C, Baiz Carlos R
Department of Chemistry, University of Texas, Austin, Texas, USA.
J Chem Phys. 2024 Mar 21;160(11). doi: 10.1063/5.0190343.
Thiocyanates, nitriles, and azides represent a versatile set of vibrational probes to measure the structure and dynamics in biological systems. The probes are minimally perturbative, the nitrile stretching mode appears in an otherwise uncongested spectral region, and the spectra report on the local environment around the probe. Nitrile frequencies and lineshapes, however, are difficult to interpret, and theoretical models that connect local environments with vibrational frequencies are often necessary. However, the development of both more accurate and intuitive models remains a challenge for the community. The present work provides an experimentally consistent collection of experimental measurements, including IR absorption and ultrafast two-dimensional infrared (2D IR) spectra, to serve as a benchmark in the development of future models. Specifically, we catalog spectra of the nitrile stretching mode of methyl thiocyanate (MeSCN) in fourteen different solvents, including non-polar, polar, and protic solvents. Absorption spectra indicate that π-interactions may be responsible for the line shape differences observed between aromatic and aliphatic alcohols. We also demonstrate that a recent Kamlet-Taft formulation describes the center frequency MeSCN. Furthermore, we report cryogenic infrared spectra that may lead to insights into the peak asymmetry in aprotic solvents. 2D IR spectra measured in protic solvents serve to connect hydrogen bonding with static inhomogeneity. We expect that these insights, along with the publicly available dataset, will be useful to continue advancing future models capable of quantitatively describing the relation between local environments, line shapes, and dynamics in nitrile probes.
硫氰酸盐、腈类和叠氮化物是一组多功能的振动探针,用于测量生物系统中的结构和动力学。这些探针的扰动极小,腈的伸缩模式出现在其他未被占据的光谱区域,并且光谱反映了探针周围的局部环境。然而,腈的频率和线形很难解释,通常需要将局部环境与振动频率联系起来的理论模型。然而,开发更准确、更直观的模型对该领域来说仍然是一个挑战。目前的工作提供了一组实验上一致的实验测量数据,包括红外吸收和超快二维红外(2D IR)光谱,作为未来模型开发的基准。具体来说,我们编录了硫氰酸甲酯(MeSCN)在十四种不同溶剂中的腈伸缩模式光谱,这些溶剂包括非极性、极性和亲质子溶剂。吸收光谱表明,π相互作用可能是芳香醇和脂肪醇之间观察到的线形差异的原因。我们还证明了最近的Kamlet-Taft公式描述了MeSCN的中心频率。此外,我们报告了低温红外光谱,这可能有助于深入了解非质子溶剂中的峰不对称性。在亲质子溶剂中测量的二维红外光谱有助于将氢键与静态不均匀性联系起来。我们预计,这些见解以及公开可用的数据集,将有助于继续推进未来能够定量描述腈探针中局部环境、线形和动力学之间关系的模型。