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蛋白质-水偶联调节界面膜结合蛋白中酰胺 I 模式的非谐性。

Protein-water coupling tunes the anharmonicity of amide I modes in the interfacial membrane-bound proteins.

机构信息

Hefei National Laboratory for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui 230026, China.

出版信息

J Chem Phys. 2022 Mar 14;156(10):105103. doi: 10.1063/5.0078632.

Abstract

The diagonal anharmonicity of an amide I mode of protein backbones plays a critical role in a protein's vibrational dynamics and energy transfer. However, this anharmonicity of long-chain peptides and proteins in HO environment is still lacking. Here, we investigate the anharmonicity of the amide I band of proteins at the lipid membrane/HO interface using a surface-sensitive pump-probe setup in which a femtosecond infrared pump is followed by a femtosecond broadband sum frequency generation vibrational spectroscopy probe. It is found that the anharmonicity of the amide I mode in ideal α-helical and β-sheet structures at hydrophobic environments is 3-4 cm, indicating that the amide I mode in ideal α-helical and β-sheet structures is delocalized over eight peptide bonds. The anharmonicity increases as the bandwidth of the amide I mode increases due to the exposure of peptide bonds to HO. More HO exposure amounts lead to a larger anharmonicity. The amide I mode of the peptides with large HO exposure amounts is localized in one to two peptide bonds. Our finding reveals that the coupling between the amide I mode and the HO bending mode does not facilitate the delocalization of the amide I mode along the peptide chain, highlighting the impact of HO on energy transfer and structural dynamics of proteins.

摘要

蛋白质骨架中酰胺 I 模式的对角线非谐性在蛋白质的振动动力学和能量转移中起着关键作用。然而,HO 环境中长链肽和蛋白质的这种非谐性仍然缺乏研究。在这里,我们使用表面敏感的泵浦-探测装置研究了脂质膜/HO 界面处蛋白质酰胺 I 带的非谐性,其中飞秒红外泵浦后面跟着飞秒宽带和频产生振动光谱探针。结果表明,在疏水环境中理想的α-螺旋和β-折叠结构中酰胺 I 模式的非谐性为 3-4 cm,表明酰胺 I 模式在理想的α-螺旋和β-折叠结构中分布在八个肽键上。由于肽键暴露于 HO,酰胺 I 模式的带宽增加,导致非谐性增加。更多的 HO 暴露量导致更大的非谐性。HO 暴露量大的肽的酰胺 I 模式在一个到两个肽键上局部化。我们的发现表明,酰胺 I 模式与 HO 弯曲模式之间的耦合不会促进酰胺 I 模式沿着肽链的非局域化,突出了 HO 对蛋白质能量转移和结构动力学的影响。

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