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界面蛋白中分子间蛋白质-水偶联阻碍酰胺 A 与酰胺 I 模式之间的偶联。

Intermolecular Protein-Water Coupling Impedes the Coupling Between the Amide A and Amide I Mode in Interfacial Proteins.

机构信息

Hefei National Research Center for Physical Sciences at the Microscale, and Department of Chemical Physics, University of Science and Technology of China, 96 Jinzhai Road, Hefei, Anhui 230026, China.

Hefei National Laboratory, University of Science and Technology of China, Hefei, Anhui 230088, China.

出版信息

Langmuir. 2024 Mar 26;40(12):6587-6594. doi: 10.1021/acs.langmuir.4c00246. Epub 2024 Mar 14.

Abstract

The coupling between different vibrational modes in proteins is essential for chemical dynamics and biological functions and is linked to the propagation of conformational changes and pathways of allosteric communication. However, little is known about the influence of intermolecular protein-HO coupling on the vibrational coupling between amide A (NH) and amide I (C═O) bands. Here, we investigate the NH/CO coupling strength in various peptides with different secondary structures at the lipid cell membrane/HO interface using femtosecond time-resolved sum frequency generation vibrational spectroscopy (SFG-VS) in which a femtosecond infrared pump is used to excite the amide A band, and SFG-VS is used to probe transient spectral evolution in the amide A and amide I bands. Our results reveal that the NH/CO coupling strength strongly depends on the bandwidth of the amide I mode and the coupling of proteins with water molecules. A large extent of protein-water coupling significantly reduces the delocalization of the amide I mode along the peptide chain and impedes the NH/CO coupling strength. A large NH/CO coupling strength is found to show a strong correlation with the high energy transfer rate found in the light-harvesting proteins of green sulfur bacteria, which may understand the mechanism of energy transfer through a molecular system and assist in controlling vibrational energy transfer by engineering the molecular structures to achieve high energy transfer efficiency.

摘要

蛋白质中不同振动模式的耦合对于化学动力学和生物功能至关重要,与构象变化的传播和变构通讯途径有关。然而,对于分子间蛋白质-HO 耦合对酰胺 A(NH)和酰胺 I(C═O)带之间振动耦合的影响知之甚少。在这里,我们使用飞秒时间分辨和频产生振动光谱(SFG-VS)在脂质细胞膜/HO 界面研究了具有不同二级结构的各种肽中的 NH/CO 耦合强度,其中飞秒红外泵用于激发酰胺 A 带,而 SFG-VS 用于探测酰胺 A 和酰胺 I 带中的瞬态光谱演化。我们的结果表明,NH/CO 耦合强度强烈依赖于酰胺 I 模式的带宽和蛋白质与水分子的耦合。蛋白质与水分子的强耦合显著降低了酰胺 I 模式沿肽链的离域程度,并阻碍了 NH/CO 耦合强度。发现大的 NH/CO 耦合强度与绿硫细菌光捕获蛋白中发现的高能量转移率具有很强的相关性,这可能有助于通过分子系统理解能量转移的机制,并通过工程分子结构来控制振动能量转移,以实现高能量转移效率。

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