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分子模拟对理解革兰氏阴性菌细胞包膜有何贡献?

What have molecular simulations contributed to understanding of Gram-negative bacterial cell envelopes?

机构信息

Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK.

Bioinformatics Institute (A*STAR), Singapore 138671, Singapore.

出版信息

Microbiology (Reading). 2022 Mar;168(3). doi: 10.1099/mic.0.001165.

Abstract

Bacterial cell envelopes are compositionally complex and crowded and while highly dynamic in some areas, their molecular motion is very limited, to the point of being almost static in others. Therefore, it is no real surprise that studying them at high resolution across a range of temporal and spatial scales requires a number of different techniques. Details at atomistic to molecular scales for up to tens of microseconds are now within range for molecular dynamics simulations. Here we review how such simulations have contributed to our current understanding of the cell envelopes of Gram-negative bacteria.

摘要

细菌的细胞包膜在组成上是复杂且拥挤的,虽然在某些区域具有高度的动态性,但在其他区域,其分子运动非常有限,几乎处于静态。因此,研究它们在不同时间和空间尺度上的高分辨率需要多种不同的技术,这并不奇怪。从原子到分子尺度,高达数十微秒的细节现在都在分子动力学模拟的范围内。在这里,我们回顾了这些模拟如何有助于我们目前对革兰氏阴性细菌细胞包膜的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/478c/9558347/93d72826a3d4/mic-168-1165-g001.jpg

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