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使用锗烯纳米带的 DNA/RNA 测序 二维分子电子光谱学:一项研究。

DNA/RNA sequencing using germanene nanoribbons two dimensional molecular electronic spectroscopy: an study.

机构信息

Department of Atomic, Molecular and Nuclear Physics, Faculty of Science, Campus de Fuente Nueva, University of Granada, 18071 Granada, Spain.

出版信息

Nanoscale. 2022 Mar 31;14(13):5147-5153. doi: 10.1039/d1nr07336b.

Abstract

Developing fast, reliable, and cost effective, yet practical DNA/RNA sequencing methods and devices is a must. In this regard, motivated by the recently introduced two-dimensional electronic molecular spectroscopy (2DMES) technique for molecular recognition, and the compatibility of 2D layers of group IV elements with the current technology of manufacturing electronic devices, we investigate the capability of germanene nanoribbons (GeNRs) as a feasible, accurate, and ultra-fast sequencing device under the application of 2DMES. We show that by employing 2DMES, not only can GeNRs unambiguously distinguish different nucleobases to sequence DNA/RNA, they are also capable of recognizing methylated nucleobases that could be related to cancerous cell growth. Our calculations indicate that, compared to frequently used graphene layers, germanene provides more distinct adsorption energies for different nucleobases which implies its better ability to recognize various molecules unambiguously. By calculating the conductance sensitivity of the system for experimental purposes, we also show that the introduced sequencing device possesses a high sensitivity and selectivity characteristic. Thus, our proposed system would be a promising device for next-generation DNA sequencing technologies and would be realizable using the current protocols of fabricating electronic devices.

摘要

开发快速、可靠、经济高效且实用的 DNA/RNA 测序方法和设备是当务之急。在这方面,受最近引入的二维电子分子光谱(2DMES)技术用于分子识别以及 IV 族元素二维层与制造电子设备的当前技术的兼容性的启发,我们研究了锗烯纳米带(GeNRs)作为一种可行、准确和超快测序设备的能力,该设备在 2DMES 的应用下。我们表明,通过采用 2DMES,GeNRs 不仅可以明确区分不同的碱基来对 DNA/RNA 进行测序,还可以识别可能与癌细胞生长有关的甲基化碱基。我们的计算表明,与常用的石墨烯层相比,锗烯为不同的碱基提供了更明显的吸附能,这意味着它能够更明确地区分各种分子。通过计算系统的电导灵敏度以用于实验目的,我们还表明,所提出的测序设备具有高灵敏度和选择性的特点。因此,我们提出的系统将成为下一代 DNA 测序技术的有前途的设备,并且可以使用当前制造电子设备的协议来实现。

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