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物种(啮齿目:棘鼠科)中的LINE-1和SINE-B1图谱绘制与基因组多样化

LINE-1 and SINE-B1 mapping and genome diversification in species (Rodentia: Echimyidae).

作者信息

Soares Simone Cardoso, Eler Eduardo Schmidt, E Silva Carlos Eduardo Faresin, da Silva Maria Nazareth Ferreira, Araújo Naiara Pereira, Svartman Marta, Feldberg Eliana

机构信息

Pós-Graduação em Genética, Conservação e Biologia Evolutiva, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil

Laboratório de Genética Animal (LGA), Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil.

出版信息

Life Sci Alliance. 2022 Mar 18;5(6). doi: 10.26508/lsa.202101104. Print 2022 Jun.

Abstract

This study aimed to understand the impact of LINE-1 and SINE-B1 retroelements on the architecture and karyotypic diversification of five rodent species of the genus from different regions of the Amazon. Karyotype comparisons were performed using fluorescent interspecific in situ hybridization. The L1 and B1 retroelements showed a non-random arrangement and a conserved pattern when the genomes of the five species of were compared, including the two cytotypes of The signal homeology among the chromosomes and the degree of similarity among the formed clusters indicate rearrangements such as fusion/fission, and demonstrates that these retroelements can behave as derived characters shared in The differentiated distribution and organization of these retroelements in the karyotypes and in the chromosomal fiber, respectively, may represent a strong indication of their role as generating sources of karyotypic diversity in the genus and provide insights into the evolutionary relationships between taxa.

摘要

本研究旨在了解LINE-1和SINE-B1逆转录元件对来自亚马逊不同地区的五个鼠属啮齿动物物种的染色体结构和核型多样化的影响。使用荧光种间原位杂交进行核型比较。当比较五个鼠属物种的基因组时,包括两个细胞型,L1和B1逆转录元件呈现出非随机排列和保守模式。染色体之间的信号同源性以及形成的簇之间的相似程度表明存在融合/裂变等重排,并证明这些逆转录元件可作为鼠属中共享的衍生特征。这些逆转录元件分别在核型和染色体纤维中的差异分布和组织,可能有力地表明它们作为鼠属核型多样性产生来源的作用,并为分类群之间的进化关系提供见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45e8/8932440/5d2df29f1e9d/LSA-2021-01104_Fig1.jpg

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