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存活的阿尔库拉亚-库钦斯卡斯综合征患者中的复合杂合变异:一例新病例报告及文献综述

Compound Heterozygous Variants in a Surviving Patient With Alkuraya-Kučinskas Syndrome: A New Case Report and a Review of the Literature.

作者信息

Yue Ling, Jin Mei, Wang Xin, Wang Jing, Chen Ling, Jia Rong, Yang Zuozhen, Yang Fan, Li Jingman, Chen Cuiying, Zheng Huacheng, Yang Huafang

机构信息

Department of Neurological Rehabilitation, Children's Hospital of Hebei Province, Hebei, China.

Electrophysiology Room, Children's Hospital of Hebei Province, Hebei, China.

出版信息

Front Pediatr. 2022 Mar 4;10:806752. doi: 10.3389/fped.2022.806752. eCollection 2022.

DOI:10.3389/fped.2022.806752
PMID:35311058
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8931281/
Abstract

BACKGROUND

Alkuraya-Kučinskas syndrome is an autosomal recessive disorder characterized by brain abnormalities associated with cerebral parenchymal underdevelopment, arthrogryposis, club foot, and global developmental delay. Most reported cases were cases of premature termination of pregnancies or neonatal deaths. To date, limited studies of nine surviving patients with global developmental delay and intellectual disability have been reported. In this study, we report another surviving patient.

METHODS

Whole-exome sequencing was utilized for the proband, and variants were filtered, annotated, and classified. Candidate variants were validated by Sanger sequencing of the proband and his family. The literature was reviewed; the prognosis among different regions and the variant type was analyzed.

RESULTS

A non-synonymous variant [NM_015312.3: exon29: c.4892C>G (p.Pro1631Arg)] was identified and validated in the patient's father. A frameshift duplication [NM_015312.3: exon62: c.10872dupA (p.Arg3625Lysfs5)] that caused early translation termination was identified in his mother. The literature was reviewed, variants were classified into three regions of KIAA1109, and their survival status was summarized.

CONCLUSION

We reported another survival proband with Alkuraya-Kučinskas syndrome driven by KIAA1109. Our case expands the genotypic spectrum of Alkuraya-Kučinskas syndrome and explored the relationship between the variant region and survival.

摘要

背景

Alkuraya-Kučinskas综合征是一种常染色体隐性疾病,其特征为与脑实质发育不全相关的脑部异常、关节挛缩、马蹄内翻足和全面发育迟缓。大多数已报道的病例为妊娠终止或新生儿死亡。迄今为止,仅有关于9例存活的全面发育迟缓和智力残疾患者的有限研究报道。在本研究中,我们报告了另一例存活患者。

方法

对先证者进行全外显子组测序,对变异进行过滤、注释和分类。通过对先证者及其家人进行Sanger测序验证候选变异。查阅文献,分析不同区域和变异类型的预后情况。

结果

在患者父亲中鉴定并验证了一个非同义变异[NM_015312.3:外显子29:c.4892C>G(p.Pro1631Arg)]。在其母亲中鉴定出一个导致早期翻译终止的移码重复变异[NM_015312.3:外显子62:c.10872dupA(p.Arg3625Lysfs5)]。查阅文献,将变异分类到KIAA1109的三个区域,并总结了它们的存活状态。

结论

我们报告了另一例由KIAA1109驱动的Alkuraya-Kučinskas综合征存活先证者。我们的病例扩展了Alkuraya-Kučinskas综合征的基因型谱,并探索了变异区域与存活之间的关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/46c8/8931281/753d94c50cd1/fped-10-806752-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/46c8/8931281/753d94c50cd1/fped-10-806752-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/46c8/8931281/753d94c50cd1/fped-10-806752-g0001.jpg

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本文引用的文献

1
KIAA1109 gene mutation in surviving patients with Alkuraya-Kučinskas syndrome: a review of literature.Alkuraya-Kučinskas 综合征存活患者中 KIAA1109 基因突变:文献复习。
BMC Med Genet. 2020 Jun 26;21(1):136. doi: 10.1186/s12881-020-01074-2.
2
Endosomal trafficking defects in patient cells with biallelic variants.具有双等位基因变异的患者细胞中的内体运输缺陷。
Genes Dis. 2019 Jan 7;6(1):56-67. doi: 10.1016/j.gendis.2018.12.004. eCollection 2019 Mar.
3
KIAA1109 Variants Are Associated with a Severe Disorder of Brain Development and Arthrogryposis.
KIAA1109 变异与严重的脑发育障碍和关节挛缩症有关。
Am J Hum Genet. 2018 Jan 4;102(1):116-132. doi: 10.1016/j.ajhg.2017.12.002. Epub 2017 Dec 28.
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BioGPS: building your own mash-up of gene annotations and expression profiles.生物GPS:构建属于你自己的基因注释与表达谱混搭组合。
Nucleic Acids Res. 2016 Jan 4;44(D1):D313-6. doi: 10.1093/nar/gkv1104. Epub 2015 Nov 17.
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Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.序列变异解读的标准与指南:美国医学遗传学与基因组学学会和分子病理学协会的联合共识推荐
Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.
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Accelerating novel candidate gene discovery in neurogenetic disorders via whole-exome sequencing of prescreened multiplex consanguineous families.通过对预先筛选的多重近亲家庭进行全外显子组测序,加速神经遗传性疾病新候选基因的发现。
Cell Rep. 2015 Jan 13;10(2):148-61. doi: 10.1016/j.celrep.2014.12.015. Epub 2014 Dec 31.
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CDD: NCBI's conserved domain database.CDD:美国国家生物技术信息中心的保守结构域数据库。
Nucleic Acids Res. 2015 Jan;43(Database issue):D222-6. doi: 10.1093/nar/gku1221. Epub 2014 Nov 20.
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wANNOVAR: annotating genetic variants for personal genomes via the web.wANNOVAR:通过网络为个人基因组注释遗传变异。
J Med Genet. 2012 Jul;49(7):433-6. doi: 10.1136/jmedgenet-2012-100918. Epub 2012 Jun 20.
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WASP is activated by phosphatidylinositol-4,5-bisphosphate to restrict synapse growth in a pathway parallel to bone morphogenetic protein signaling.WASP 通过磷脂酰肌醇-4,5-二磷酸激活,以限制与骨形态发生蛋白信号传导平行的突触生长。
Proc Natl Acad Sci U S A. 2010 Oct 5;107(40):17379-84. doi: 10.1073/pnas.1001794107. Epub 2010 Sep 15.
10
NCBI BLAST: a better web interface.美国国立生物技术信息中心基本局部比对搜索工具:一个更好的网络界面。
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