RNA Biology Research Laboratory, Molecular Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, West Bengal, India.
Structural Biology and Bioinformatics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, West Bengal, India.
Mol Cell Biol. 2022 Apr 21;42(4):e0045221. doi: 10.1128/mcb.00452-21. Epub 2022 Mar 21.
MicroRNAs (miRNAs) repress protein expression by binding to the target mRNAs. Exploring whether the expression of one miRNA can regulate the abundance and activity of other miRNAs, we noted the coordinated biogenesis of miRNAs in activated macrophages. miRNAs with higher numbers of binding sites (the "primary" miRNAs) induce expression of other miRNAs ("secondary" miRNAs) having binding sites on the 3' untranslated region (UTR) of common target mRNAs. miR-146a-5p, in activated macrophages, acts as a "primary" miRNA that coordinates biogenesis of "secondary" miR-125b, miR-21, or miR-142-3p to target new sets of mRNAs to balance the immune responses. During coordinated biogenesis, primary miRNA drives the biogenesis of secondary miRNA in a target mRNA- and Dicer1 activity-dependent manner. The coordinated biogenesis of miRNAs was observed across different cell types. The target-dependent coordinated miRNA biogenesis also ensures a cumulative mode of action of primary and secondary miRNAs on the secondary target mRNAs. Interestingly, using the "primary" miR-146a-5p-specific inhibitor, we could inhibit the target-dependent biogenesis of secondary miRNAs that can stop the miRNA-mediated buffering of cytokine expression and inflammatory response occurring in activated macrophages. Computational analysis suggests the prevalence of coordinated biogenesis of miRNAs also in other contexts in human and in mouse.
微小 RNA(miRNA)通过与靶 mRNAs 结合来抑制蛋白质的表达。在探索一种 miRNA 的表达是否能调节其他 miRNA 的丰度和活性时,我们注意到激活的巨噬细胞中 miRNA 的协调生物发生。具有更多结合位点的 miRNA(“初级”miRNA)诱导具有共同靶 mRNAs 3'非翻译区(UTR)上结合位点的其他 miRNA(“次级”miRNA)的表达。在激活的巨噬细胞中,miR-146a-5p 作为一种“初级”miRNA,协调“次级”miR-125b、miR-21 或 miR-142-3p 的生物发生,以针对新的一批 mRNAs 来平衡免疫反应。在协调的生物发生过程中,初级 miRNA 以靶 mRNA 和 Dicer1 活性依赖性的方式驱动次级 miRNA 的生物发生。miRNA 的协调生物发生在不同的细胞类型中都观察到了。靶依赖的协调 miRNA 生物发生也确保了初级和次级 miRNA 对次级靶 mRNAs 的累积作用模式。有趣的是,使用“初级”miR-146a-5p 特异性抑制剂,我们可以抑制次级 miRNA 的靶依赖性生物发生,从而阻止发生在激活的巨噬细胞中细胞因子表达和炎症反应的 miRNA 介导缓冲。计算分析表明,在人类和小鼠的其他情况下,miRNA 的协调生物发生也很普遍。
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