Habibi Nazima, Al Salameen Fadila, Rahman Muhammed, Kumar Vinod, Al Amad Sami, Shajan Anisha, Zakir Farhana, Abdul Razzack Nasreem, Tinwala Waiel Hussain
Environment and Life Sciences Research Centre, Kuwait Institute for Scientific Research, Kuwait.
Department of Computer Science, Delhi Technological University, Delhi, India.
Data Brief. 2022 Mar 8;42:108031. doi: 10.1016/j.dib.2022.108031. eCollection 2022 Jun.
tree population is declining in several countries of the world especially in the Arabian peninsula due to human-induced activities. The tree has potential medicinal and economic benefits as a source of fuel and timber. It can fix nitrogen, a significant property that assists in desert rehabilitation. However, the lack of genomic information of hampers its genetic study and breeding process. We performed paired-end sequencing of at a depth of 120X to obtain raw sequences of 108.9 GB with a per base quality >Q30. Filtered raw data was assembled into a fasta file of 4 GB. The assembled genomic sequences consisted of 901,755 single sequence repeats (SSRs). In total 11,596 primer pairs were designed against these SSR motifs. The data generated provides baseline genomic information about the species and formulates a base for further sequencing of through PACBio and HiC technologies. The novel developed SSR markers will facilitate genetic diversity and conservation studies for species.
由于人类活动,世界上几个国家的树木种群数量正在下降,特别是在阿拉伯半岛。这种树作为燃料和木材来源具有潜在的药用和经济效益。它可以固氮,这是有助于沙漠恢复的一项重要特性。然而,缺乏基因组信息阻碍了其遗传研究和育种进程。我们进行了深度为120X的双端测序,以获得108.9GB的原始序列,每个碱基质量>Q30。过滤后的原始数据被组装成一个4GB的fasta文件。组装后的基因组序列由901,755个单序列重复(SSR)组成。针对这些SSR基序总共设计了11,596对引物。所产生的数据提供了关于该物种的基线基因组信息,并为通过PacBio和HiC技术对其进行进一步测序奠定了基础。新开发的SSR标记将有助于该物种的遗传多样性和保护研究。