Department of Radiation Oncology, Cancer Hospital of China Medical University, Liaoning Cancer Hospital & Institute, No. 44 Xiaoheyan Road, Dadong District, Shenyang, 110042 Liaoning, China.
Department of Radiology, Suzhou Kowloon Hospital, Shanghai Jiaotong University School of Medicine, No. 118 Wansheng Street, Suzhou Industrial Park, Suzhou, 215028 Jiangsu, China.
Dis Markers. 2022 Mar 14;2022:4033583. doi: 10.1155/2022/4033583. eCollection 2022.
OBJECTIVE: Clear cell renal cell carcinoma (ccRCC) carries significant morbidity and mortality globally and is often resistant to conventional radiotherapy and chemotherapy. Immune checkpoint blockade (ICB) has received attention in ccRCC patients as a promising anticancer treatment. Furthermore, competitive endogenous RNA (ceRNA) networks are crucial for the occurrence and progression of various tumors. This study was aimed at identifying reliable prognostic signatures and exploring potential mechanisms between ceRNA regulation and immune cell infiltration in ccRCC patients. METHODS AND RESULTS: Gene expression profiling and clinical information of ccRCC samples were obtained from The Cancer Genome Atlas (TCGA) database. Through comprehensive bioinformatic analyses, differentially expressed mRNAs (DEmRNAs; = 131), lncRNAs (DElncRNAs; = 12), and miRNAs (DEmiRNAs; = 25) were identified to establish ceRNA networks. The CIBERSORT algorithm was applied to calculate the proportion of 22 types of tumor-infiltrating immune cells (TIICs) in ccRCC tissues. Subsequently, univariate Cox, Lasso, and multivariate Cox regression analyses were employed to construct ceRNA-related and TIIC-related prognostic signatures. In addition, we explored the relationship between the crucial genes and TIICs via coexpression analysis, which revealed that the interactions between MALAT1, miR-1271-5p, KIAA1324, and follicular helper T cells might be closely correlated with the progression of ccRCC. Ultimately, we preliminarily validated that the potential MALAT1/miR-1271-5p/KIAA1324 axis was consistent with the ceRNA theory by qRT-PCR in the ccRCC cell lines. CONCLUSION: On the basis of the ceRNA networks and TIICs, we constructed two prognostic signatures with excellent predictive value and explored possible molecular regulatory mechanisms, which might contribute to the improvement of prognosis and individualized treatment for ccRCC patients.
目的:透明细胞肾细胞癌 (ccRCC) 在全球范围内具有显著的发病率和死亡率,且常对常规放化疗产生耐药。免疫检查点阻断 (ICB) 已成为 ccRCC 患者有前途的抗癌治疗方法,受到关注。此外,竞争内源性 RNA (ceRNA) 网络对于各种肿瘤的发生和发展至关重要。本研究旨在鉴定可靠的预后标志物,并探索 ccRCC 患者中 ceRNA 调控与免疫细胞浸润之间的潜在机制。
方法和结果:从癌症基因组图谱 (TCGA) 数据库中获取 ccRCC 样本的基因表达谱和临床信息。通过全面的生物信息学分析,确定了 131 个差异表达的信使 RNA (DEmRNAs)、12 个长链非编码 RNA (DElncRNAs) 和 25 个微小 RNA (DEmiRNAs),以建立 ceRNA 网络。应用 CIBERSORT 算法计算 ccRCC 组织中 22 种肿瘤浸润免疫细胞 (TIICs) 的比例。随后,采用单因素 Cox、Lasso 和多因素 Cox 回归分析构建 ceRNA 相关和 TIIC 相关的预后标志物。此外,我们通过共表达分析探讨了关键基因与 TIICs 之间的关系,结果表明 MALAT1、miR-1271-5p、KIAA1324 与滤泡辅助 T 细胞之间的相互作用可能与 ccRCC 的进展密切相关。最后,我们通过 qRT-PCR 在 ccRCC 细胞系中初步验证了潜在的 MALAT1/miR-1271-5p/KIAA1324 轴与 ceRNA 理论的一致性。
结论:基于 ceRNA 网络和 TIICs,我们构建了两个具有优异预测价值的预后标志物,并探讨了可能的分子调控机制,这可能有助于改善 ccRCC 患者的预后和个体化治疗。
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