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海星的腕臂:作为进化、发育和再生生物学模型系统的短桨海星的广泛应用。

The arm of the starfish: The far-reaching applications of Patiria miniata as a model system in evolutionary, developmental, and regenerative biology.

机构信息

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, United States.

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, United States.

出版信息

Curr Top Dev Biol. 2022;147:523-543. doi: 10.1016/bs.ctdb.2022.01.006. Epub 2022 Feb 21.

DOI:10.1016/bs.ctdb.2022.01.006
PMID:35337461
Abstract

Many species of echinoderms have long been considered model research organisms in biology. Historically, much of this research has focused on the embryology of sea urchins and the use of their extensive gene regulatory networks as a tool to understand how the genome controls cell state specification and patterning. The establishment of Patiria miniata, the bat sea star, as a research organism has allowed us to expand on the concepts explored with sea urchins, viewing these genetic networks through a comparative lens, gaining great insight into the evolutionary mechanisms that shape developmental diversity. Extensive molecular tools have been developed in P. miniata, designed to explore gene expression dynamics and build gene regulatory networks. Echinoderms also have a robust set of bioinformatic and computational resources, centered around echinobase.org, an extensive database containing multiomic, developmental, and experimental resources for researchers. In addition to comparative evolutionary development, P. miniata is a promising system in its own right for studying whole body regeneration, metamorphosis and body plan development, as well as marine disease.

摘要

许多棘皮动物物种长期以来一直被认为是生物学中的典型研究生物。从历史上看,这项研究的大部分内容都集中在海胆的胚胎学上,并利用其广泛的基因调控网络作为一种工具,来了解基因组如何控制细胞状态的指定和模式形成。作为一种研究生物,紫海胆(Patiria miniata)的建立使我们能够扩展与海胆探索的概念,通过比较的视角来看待这些遗传网络,深入了解塑造发育多样性的进化机制。在紫海胆中已经开发了广泛的分子工具,旨在探索基因表达动态并构建基因调控网络。棘皮动物还拥有一套强大的生物信息学和计算资源,其中心是 echinobase.org,这是一个包含多组学、发育和实验资源的大型数据库,为研究人员提供服务。除了比较进化发育之外,紫海胆本身也是一个很有前途的系统,可用于研究全身再生、变态和体型发育以及海洋疾病。

相似文献

1
The arm of the starfish: The far-reaching applications of Patiria miniata as a model system in evolutionary, developmental, and regenerative biology.海星的腕臂:作为进化、发育和再生生物学模型系统的短桨海星的广泛应用。
Curr Top Dev Biol. 2022;147:523-543. doi: 10.1016/bs.ctdb.2022.01.006. Epub 2022 Feb 21.
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New hypotheses of cell type diversity and novelty from orthology-driven comparative single cell and nuclei transcriptomics in echinoderms.从棘皮动物的直系同源物驱动的比较单细胞和细胞核转录组学中获得细胞类型多样性和新颖性的新假设。
Elife. 2023 Jul 20;12:e80090. doi: 10.7554/eLife.80090.
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Architecture and evolution of the -regulatory system of the echinoderm gene.棘皮动物基因 - 调控系统的结构与演化。
Elife. 2022 Feb 25;11:e72834. doi: 10.7554/eLife.72834.
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Echinobase: a resource to support the echinoderm research community.棘皮动物数据库:一个支持棘皮动物研究界的资源。
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Developmental transcriptomes of the sea star, Patiria miniata, illuminate how gene expression changes with evolutionary distance.海盘车 Patiria miniata 的发育转录组阐明了基因表达如何随进化距离而变化。
Sci Rep. 2019 Nov 7;9(1):16201. doi: 10.1038/s41598-019-52577-9.
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Developmental gene regulatory network architecture across 500 million years of echinoderm evolution.五亿年棘皮动物进化历程中的发育基因调控网络架构
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The skeletal proteome of the sea star Patiria miniata and evolution of biomineralization in echinoderms.海星小海盘车的骨骼蛋白质组与棘皮动物生物矿化的进化
BMC Evol Biol. 2017 Jun 5;17(1):125. doi: 10.1186/s12862-017-0978-z.
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Developmental gene regulatory network evolution: insights from comparative studies in echinoderms.发育基因调控网络的进化:来自棘皮动物比较研究的见解
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Tracing the history of cell types.追溯细胞类型的历史。
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