Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, United States.
Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, United States.
Curr Top Dev Biol. 2022;147:523-543. doi: 10.1016/bs.ctdb.2022.01.006. Epub 2022 Feb 21.
Many species of echinoderms have long been considered model research organisms in biology. Historically, much of this research has focused on the embryology of sea urchins and the use of their extensive gene regulatory networks as a tool to understand how the genome controls cell state specification and patterning. The establishment of Patiria miniata, the bat sea star, as a research organism has allowed us to expand on the concepts explored with sea urchins, viewing these genetic networks through a comparative lens, gaining great insight into the evolutionary mechanisms that shape developmental diversity. Extensive molecular tools have been developed in P. miniata, designed to explore gene expression dynamics and build gene regulatory networks. Echinoderms also have a robust set of bioinformatic and computational resources, centered around echinobase.org, an extensive database containing multiomic, developmental, and experimental resources for researchers. In addition to comparative evolutionary development, P. miniata is a promising system in its own right for studying whole body regeneration, metamorphosis and body plan development, as well as marine disease.
许多棘皮动物物种长期以来一直被认为是生物学中的典型研究生物。从历史上看,这项研究的大部分内容都集中在海胆的胚胎学上,并利用其广泛的基因调控网络作为一种工具,来了解基因组如何控制细胞状态的指定和模式形成。作为一种研究生物,紫海胆(Patiria miniata)的建立使我们能够扩展与海胆探索的概念,通过比较的视角来看待这些遗传网络,深入了解塑造发育多样性的进化机制。在紫海胆中已经开发了广泛的分子工具,旨在探索基因表达动态并构建基因调控网络。棘皮动物还拥有一套强大的生物信息学和计算资源,其中心是 echinobase.org,这是一个包含多组学、发育和实验资源的大型数据库,为研究人员提供服务。除了比较进化发育之外,紫海胆本身也是一个很有前途的系统,可用于研究全身再生、变态和体型发育以及海洋疾病。