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来源于中间高温放线菌的苯丙氨酸脱氢酶的工程化用于新型同型谷氨酸的生产。

Engineering of phenylalanine dehydrogenase from Thermoactinomyces intermedius for the production of a novel homoglutamate.

机构信息

Department of Biology, The University of Haripur, Haripur, Khyber Pakhtunkhwa, Pakistan.

School of Life Science, Beijing University of Chemical Technology, Beijing, China.

出版信息

PLoS One. 2022 Mar 30;17(3):e0263784. doi: 10.1371/journal.pone.0263784. eCollection 2022.

Abstract

The dramatic increase in healthcare costs has become a significant burden to this era. Many patients are unable to access medication because of the high price of drugs. Genetic engineering has made advances to increase the yield, titer, and productivity in the bio-based production of chemicals, materials of interest, and identification of innovative targets for drug discovery. Currently, the production of homoglutamate (α-Aminoadipic acid) involves petrochemical routes that are costly with low yield and often not suitable for industrial production. Here, we established the development of NADH-dependent homoglutamate by engineering NADH-dependent phenylalanine dehydrogenase (PDH) from Thermoactinomyces intermedius, which provides a novel tool for in-vivo metabolic engineering and in-vitro catalysis. Based on computational insight into the structure, we proposed the site-specific directed mutagenesis of the two important residues of PDH through docking simulations by AutoDock Vina which elucidated the binding mode of PDH with α-Ketoadipic acid and ligands. Our results demonstrated that the catalytic efficiency Km/Kcat of the final mutant Ala135Arg showed a 3-fold increase amination activity towards the ketoadipic acid as compared to the other mutant Gly114Arg, a double mutant Gly114Arg/Ala135Arg, and wild type TiPDH. Furthermore, we have introduced formate dehydrogenase as a cofactor regenerative system in this study which further made this study economically viable. Our study unfolds the possibility of biosynthesis of other non-proteinogenic amino acids that might be valuable pharmaceutical intermediaries.

摘要

医疗保健成本的急剧增长已经成为这个时代的一个重大负担。许多患者因为药品价格高昂而无法获得药物。基因工程在生物基化学品、有价值材料的生产和创新药物发现靶点的鉴定方面取得了进展,以提高产量、效价和生产力。目前,同型谷氨酸(α-氨基己二酸)的生产涉及到成本高、产量低且通常不适合工业生产的石化路线。在这里,我们通过工程化来自中温栖热菌的 NADH 依赖性苯丙氨酸脱氢酶(PDH)来建立 NADH 依赖性同型谷氨酸的开发,这为体内代谢工程和体外催化提供了一种新的工具。基于对结构的计算洞察,我们通过 AutoDock Vina 的对接模拟提出了 PDH 两个重要残基的定点定向突变,阐明了 PDH 与α-酮戊二酸和配体的结合模式。我们的结果表明,与其他突变体 Gly114Arg、双突变体 Gly114Arg/Ala135Arg 和野生型 TiPDH 相比,最终突变体 Ala135Arg 的催化效率 Km/Kcat 对酮戊二酸的氨化活性提高了 3 倍。此外,我们在这项研究中引入了甲酸脱氢酶作为辅酶再生系统,这使得这项研究在经济上更加可行。我们的研究展示了生物合成其他非蛋白质氨基酸的可能性,这些氨基酸可能是有价值的药物中间体。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8610/8967036/c52c6ad64cc2/pone.0263784.g001.jpg

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