Li Yicong, Pu Feiyang, Wang Huihui, Cheng Yan, Li Zhuo, Ma Zhongren, Zhou Jianhua
Biomedical Research Center, Northwest Minzu University, Lanzhou 730030, Gansu, China.
College of Life Science and Engineering, Northwest Minzu University, Lanzhou 730010, Gansu, China.
Sheng Wu Gong Cheng Xue Bao. 2022 Mar 25;38(3):882-892. doi: 10.13345/j.cjb.210364.
With the widespread application of genomics and transcriptomics in the genetics and cell biology of different species, synonymous codon usage bias has been gradually accepted and used to study the deep connection between biological evolution and biological phenotypes. It is an important part of the life activities that mRNA is expressed into proteins with normal biological activities. The synonymous codon usage patterns, which were named as 'the second genetic codon', can express genetic information carried by themselves at the levels of transcriptional regulations, translational regulations and metabolic activities through molecular mechanisms such as fine-tune translation selection. Some studies have shown that the length of mRNA half-life has significant impacts on mRNA activity and the process of transcription and translation. This review summarized the roles of synonymous codon usage patterns in transcription, translational regulation and post-translational modification, with the aim to better understand how organisms skillfully utilize the genetic effects caused by codon usage patterns to accurately synthesize different types of proteins, so as to ensure the growth or differentiation of the specific gene expression procedures to carry out smoothly and maintain the normal life cycle.
随着基因组学和转录组学在不同物种的遗传学和细胞生物学中的广泛应用,同义密码子使用偏好已逐渐被接受并用于研究生物进化与生物表型之间的深层联系。mRNA表达为具有正常生物活性的蛋白质是生命活动的重要组成部分。被称为“第二遗传密码”的同义密码子使用模式,可通过微调翻译选择等分子机制在转录调控、翻译调控和代谢活动水平上表达自身携带的遗传信息。一些研究表明,mRNA半衰期的长短对mRNA活性以及转录和翻译过程有显著影响。本综述总结了同义密码子使用模式在转录、翻译调控和翻译后修饰中的作用,旨在更好地理解生物体如何巧妙利用密码子使用模式所造成的遗传效应来精确合成不同类型的蛋白质,从而确保特定基因表达程序的生长或分化顺利进行并维持正常的生命周期。