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鉴定中国 Wilson 病患者中的潜在修饰基因。

Identification of potential modifier genes in Chinese patients with Wilson disease.

机构信息

Experimental Center, Beijing Friendship Hospital, Capital Medical University, Beijing 100050, China.

Clinical Research Center for Rare Liver Diseases, Capital Medical University, Beijing, China.

出版信息

Metallomics. 2022 May 27;14(5). doi: 10.1093/mtomcs/mfac024.

Abstract

The mutations in modifier genes may contribute to some inherited diseases including Wilson disease (WD). This study was designed to identify potential modifier genes that contribute to WD. A total of 10 WD patients with single or no heterozygous ATP7B mutations were recruited for whole-exome sequencing (WES). Five hundred and thirteen candidate genes, of which the genetic variants present in at least two patients, were identified. In order to clarify which proteins might be involved in copper transfer or metabolism processes, the isobaric tags for relative and absolute quantitation (iTRAQ) was performed to identify the differentially expressed proteins between normal and CuSO4-treated cell lines. Thirteen genes/proteins were identified by both WES and iTRAQ, indicating that disease-causing variants of these genes may actually contribute to the aberrant copper ion accumulation. Additionally, the c.86C > T (p.S29L) mutation in the SLC31A2 gene (coding CTR2) has a relative higher frequency in our cohort of WD patients (6/191) than reported (0.0024 in gnomAD database) in our healthy donors (0/109), and CTR2S29L leads to increased intracellular Cu concentration and Cu-induced apoptosis in cultured cell lines. In conclusion, the WES and iTRAQ approaches successfully identified several disease-causing variants in potential modifier genes that may be involved in the WD phenotype.

摘要

突变的修饰基因可能会导致一些遗传性疾病,包括威尔逊病(WD)。本研究旨在鉴定可能导致 WD 的潜在修饰基因。共招募了 10 名 WD 患者,他们存在单或无杂合 ATP7B 突变,进行全外显子组测序(WES)。确定了 513 个候选基因,其中至少有两个患者存在遗传变异。为了阐明哪些蛋白质可能参与铜转运或代谢过程,采用相对和绝对定量的同位素标记(iTRAQ)来鉴定正常和 CuSO4 处理的细胞系之间差异表达的蛋白质。通过 WES 和 iTRAQ 鉴定出 13 个基因/蛋白质,表明这些基因的致病变异可能实际上导致异常铜离子积累。此外,SLC31A2 基因(编码 CTR2)中的 c.86C>T (p.S29L) 突变在我们的 WD 患者队列(6/191)中的频率相对较高(gnomAD 数据库中为 0.0024),而我们的健康供体(0/109)中则较低,并且 CTR2S29L 导致培养的细胞系中细胞内 Cu 浓度增加和 Cu 诱导的细胞凋亡。总之,WES 和 iTRAQ 方法成功鉴定了几个潜在修饰基因中的致病变异,这些变异可能与 WD 表型有关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddee/9154322/5b6a0f96f48b/mfac024fig1g.jpg

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