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利用仿生金属-双氧配合物对醛脱甲酰基反应的密度泛函理论机理洞察:不同的机理和反应规则

DFT Mechanistic Insights into Aldehyde Deformylations with Biomimetic Metal-Dioxygen Complexes: Distinct Mechanisms and Reaction Rules.

作者信息

Zhao Ruihua, Zhang Bei-Bei, Liu Zheyuan, Cheng Gui-Juan, Wang Zhi-Xiang

机构信息

School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing 100039, China.

Warshel Institute for Computational Biology, School of Life and Health Sciences, The Chinese University of Hong Kong (Shenzhen), Shenzhen 518172, China.

出版信息

JACS Au. 2022 Feb 25;2(3):745-761. doi: 10.1021/jacsau.2c00014. eCollection 2022 Mar 28.

DOI:10.1021/jacsau.2c00014
PMID:35373207
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8970012/
Abstract

Aldehyde deformylations occurring in organisms are catalyzed by metalloenzymes through metal-dioxygen active cores, attracting great interest to study small-molecule metal-dioxygen complexes for understanding relevant biological processes and developing biomimetic catalysts for aerobic transformations. As the known deformylation mechanisms, including nucleophilic attack, aldehyde α-H-atom abstraction, and aldehyde hydrogen atom abstraction, undergo outer-sphere pathways, we herein report a distinct inner-sphere mechanism based on density functional theory (DFT) mechanistic studies of aldehyde deformylations with a copper (II)-superoxo complex. The inner-sphere mechanism proceeds via a sequence mainly including aldehyde end-on coordination, homolytic aldehyde C-C bond cleavage, and dioxygen O-O bond cleavage, among which the C-C bond cleavage is the rate-determining step with a barrier substantially lower than those of outer-sphere pathways. The aldehyde C-C bond cleavage, enabled through the activation of the dioxygen ligand radical in a second-order nucleophilic substitution (S2)-like fashion, leads to an alkyl radical and facilitates the subsequent dioxygen O-O bond cleavage. Furthermore, we deduced the rules for the reactions of metal-dioxygen complexes with aldehydes and nitriles via the inner-sphere mechanism. Expectedly, our proposed inner-sphere mechanisms and the reaction rules offer another perspective to understand relevant biological processes involving metal-dioxygen cores and to discover metal-dioxygen catalysts for aerobic transformations.

摘要

生物体内发生的醛脱甲酰基反应由金属酶通过金属-双氧活性中心催化,这引发了人们对研究小分子金属-双氧配合物的浓厚兴趣,以了解相关生物过程并开发用于需氧转化的仿生催化剂。由于已知的脱甲酰基机制,包括亲核攻击、醛α-H原子提取和醛氢原子提取,都通过外层途径进行,我们在此基于密度泛函理论(DFT)对醛与铜(II)-超氧配合物的脱甲酰基反应进行的机理研究,报告了一种独特的内层机制。内层机制主要通过醛端基配位、醛C-C键均裂和双氧O-O键断裂的序列进行,其中C-C键断裂是速率决定步骤,其势垒明显低于外层途径的势垒。醛C-C键的断裂通过以类似二级亲核取代(S2)的方式激活双氧配体自由基来实现,产生一个烷基自由基并促进随后的双氧O-O键断裂。此外,我们通过内层机制推导了金属-双氧配合物与醛和腈反应的规则。不出所料,我们提出的内层机制和反应规则为理解涉及金属-双氧中心的相关生物过程以及发现用于需氧转化的金属-双氧催化剂提供了另一个视角。

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