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对5-氯尿嘧啶的振动光谱进行密度泛函理论(DFT)研究,包括分子结构、最高占据分子轨道-最低未占据分子轨道(HOMO-LUMO)、分子静电势/电子密度静电势(MEPs/ESPs)和热力学性质。

A DFT study of vibrational spectra of 5-chlorouracil with molecular structure, HOMO-LUMO, MEPs/ESPs and thermodynamic properties.

作者信息

Singh J S, Khan Mohd Shahid, Uddin Saeed

机构信息

Department of Physics, Jamia Millia Islamia (Central University), New Delhi, 110025 India.

出版信息

Polym Bull (Berl). 2023;80(3):3055-3083. doi: 10.1007/s00289-022-04181-7. Epub 2022 Mar 31.

DOI:10.1007/s00289-022-04181-7
PMID:35378874
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8968244/
Abstract

The density functional theory calculation has been carried out for the analysis of 5-chlorouracil using DFT/Gaussian 09 with GAR2PED. Recorded experimental spectra for Raman and IR of 5-chlorouracil have been analyzed all fundamental vibrational modes using the outcome results of DFT at 6-311++G** of Gaussian 09 calculations and the GaussView 5.09. To help the analysis of vibrational modes, GAR2PED program has been used in the calculation of PEDs. The charge transfer properties of 5-chlorouracil have been analyzed using HOMO and LUMO level energy analysis. HOMO and LUMO energy gap study supports the charge transfer possibility in molecule. These have been made to study for reactivity and stability of for the analysis of antiviral drugs against the new corona virus: COVID-19. Here, the of 5-chlorouracil is more responsible for charge transfer interaction in the and a reason of more bioactivity. The electron density mapping within molecular electrostatic potential plot and electrostatic potential plotting within iso-surface plot have been evaluated the charge distribution concept in the molecule as the nucleophilic reactions and electrophilic sites. These computations have been used to produce the molecular charges, structure and thermodynamic functions of biomolecule. This study has been made to all internal modes of chloro group substituent at pyrimidine ring of C atom. The splitting of frequencies has arisen in the two species for the normal distribution modes.

摘要

已使用带有GAR2PED的DFT/Gaussian 09对5-氯尿嘧啶进行密度泛函理论计算以进行分析。利用Gaussian 09计算中6-311++G**水平的DFT结果和GaussView 5.09,对记录的5-氯尿嘧啶的拉曼光谱和红外光谱的实验光谱进行了分析,以确定所有基本振动模式。为了辅助振动模式分析,在计算势能分布(PEDs)时使用了GAR2PED程序。通过最高已占分子轨道(HOMO)和最低未占分子轨道(LUMO)能级分析,对5-氯尿嘧啶的电荷转移性质进行了分析。HOMO和LUMO能隙研究支持了分子中电荷转移的可能性。这些研究是为了分析抗新型冠状病毒COVID-19的抗病毒药物的反应性和稳定性。在此,5-氯尿嘧啶的[此处原文缺失部分内容]对[此处原文缺失部分内容]中的电荷转移相互作用更具决定性作用,也是其具有更高生物活性的原因。已通过分子静电势图中的电子密度映射以及等表面图中的静电势绘制,评估了分子中作为亲核反应和亲电位点的电荷分布概念。这些计算已用于生成生物分子的分子电荷、结构和热力学函数。本研究针对嘧啶环上C原子的氯基团取代基的所有内禀模式进行。对于正态分布模式,在两个物种中出现了频率分裂。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f10/8968244/539ead987347/289_2022_4181_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f10/8968244/62eb9c92d81e/289_2022_4181_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f10/8968244/7fd67892767f/289_2022_4181_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f10/8968244/927fc676aaa7/289_2022_4181_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f10/8968244/fbd04eb14a97/289_2022_4181_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f10/8968244/539ead987347/289_2022_4181_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f10/8968244/62eb9c92d81e/289_2022_4181_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f10/8968244/7fd67892767f/289_2022_4181_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f10/8968244/927fc676aaa7/289_2022_4181_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f10/8968244/fbd04eb14a97/289_2022_4181_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f10/8968244/539ead987347/289_2022_4181_Fig5_HTML.jpg

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