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基于重复序列分析推断的物种(鲇形目:甲鲶科)染色体多样化

Chromosomal Diversification in Species (Siluriformes: Loricariidae) Inferred From Repetitive Sequence Analysis.

作者信息

Santos da Silva Kevin, Glugoski Larissa, Vicari Marcelo Ricardo, de Souza Augusto César Paes, Noronha Renata Coelho Rodrigues, Pieczarka Julio Cesar, Nagamachi Cleusa Yoshiko

机构信息

Laboratório de Citogenética, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil.

Laboratório de Citogenética de Peixes, Universidade Federal de São Carlos, São Carlos, Brazil.

出版信息

Front Genet. 2022 Mar 24;13:838462. doi: 10.3389/fgene.2022.838462. eCollection 2022.

Abstract

The genus has extensive chromosomal diversity among species, including heteromorphic sex chromosomes occurrence. However, studies have been shown that chromosomal diversity may still be underestimated. Repetitive sequences represent a large part of eukaryotic genomes, associated with mechanisms of karyotypic diversification, including sex chromosomes evolution. This study analyzed the karyotype diversification of two species ( sp. 1 and sp. 2) from the Amazon region by classical and molecular chromosomal markers. Conventional chromosome bands and fluorescence hybridization using probes 18S and 5S rDNA, besides (CA)n, (CG)n, (GA)n, (CAC)n, (CAG)n, (CAT)n, (GAA)n, (GAC)n, (TAA)n, and (TTAGGG)n in tandem repeats were determined on the karyotypes. sp. 1 and sp. 2 presented karyotypes with 2n = 38 (20 m + 14sm+4st, XX/XY) and 2n = 34 (20 m + 14sm, without heteromorphic sex chromosomes), respectively. Robertsonian rearrangements can explain the diploid number difference. C-bands occurred in pericentromeric regions in some chromosomes, and a single 18S rDNA locus occurred in both species. The 5S rDNA showed variation in the number of loci between species karyotypes, suggesting the occurrence of unstable sites and rearrangements associated with these sequences in The microsatellite mapping evidenced distinct patterns of organization between the two analyzed species, occurring mainly in the sex chromosomes in sp. 1, and in the centromeric and pericentromeric regions of chromosomes m/sm in sp. 2. These data shows the extensive chromosomal diversity of repetitive sequences in , which were involved in Robertsonian rearrangements and sex chromosomes differentiation.

摘要

该属在物种间具有广泛的染色体多样性,包括异形性染色体的出现。然而,研究表明染色体多样性可能仍被低估。重复序列占真核生物基因组的很大一部分,与核型多样化机制相关,包括性染色体进化。本研究通过经典和分子染色体标记分析了来自亚马逊地区的两个物种(物种1和物种2)的核型多样化。除了串联重复中的(CA)n、(CG)n、(GA)n、(CAC)n、(CAG)n、(CAT)n、(GAA)n、(GAC)n、(TAA)n和(TTAGGG)n外,还在核型上确定了常规染色体带以及使用18S和5S rDNA探针的荧光杂交。物种1和物种2的核型分别为2n = 38(20m + 14sm + 4st,XX/XY)和2n = 34(20m + 14sm,无异形性染色体)。罗伯逊重排可以解释二倍体数目的差异。C带出现在一些染色体的着丝粒周围区域,两个物种均有一个单一的18S rDNA位点。5S rDNA在物种核型之间的位点数量上存在差异,表明这些序列存在不稳定位点和重排。微卫星图谱证明了两个分析物种之间不同的组织模式,主要发生在物种1的性染色体上,以及物种2的中着丝粒/亚中着丝粒染色体的着丝粒和着丝粒周围区域。这些数据显示了该属中重复序列广泛的染色体多样性,其参与了罗伯逊重排和性染色体分化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/96c7/8987504/f726da1b4da9/fgene-13-838462-g001.jpg

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