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比较转录组分析为揭示棘螈两性高频听觉差异的分子机制提供了线索。

Comparative transcriptome analysis provides insights into the molecular mechanisms of high-frequency hearing differences between the sexes of Odorrana tormota.

机构信息

College of Life Sciences, Henan Normal University, Xinxiang, 453007, China.

The Observation and Research Field Station of Taihang Mountain Forest Ecosystems of Henan Province, Xinxiang, 453007, China.

出版信息

BMC Genomics. 2022 Apr 12;23(1):296. doi: 10.1186/s12864-022-08536-2.

DOI:10.1186/s12864-022-08536-2
PMID:35410120
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9004125/
Abstract

BACKGROUND

Acoustic communication is important for the survival and reproduction of anurans and masking background noise is a critical factor for their effective acoustic communication. Males of the concave-eared frog (Odorrana tormota) have evolved an ultrasonic communication capacity to avoid masking by the widespread background noise of local fast-flowing streams, whereas females exhibit no ultrasonic sensitivity. However, the molecular mechanisms underlying the high-frequency hearing differences between the sexes of O. tormota are still poorly understood.

RESULTS

In this study, we sequenced the brain transcriptomes of male and female O. tormota, and compared their differential gene expression. A total of 4,605 differentially expressed genes (DEGs) between the sexes of O. tormota were identified and eleven of them were related to auditory based on the annotation and enrichment analysis. Most of these DEGs in males showed a higher expression trend than females in both quantity and expression quantity. The highly expressed genes in males were relatively concentrated in neurogenesis, signal transduction, ion transport and energy metabolism, whereas the up-expressed genes in females were mainly related to the growth and development regulation of specific auditory cells.

CONCLUSIONS

The transcriptome of male and female O. tormota has been sequenced and de novo assembled, which will provide gene reference for further genomic studies. In addition, this is the first research to reveal the molecular mechanisms of sex differences in ultrasonic hearing between the sexes of O. tormota and will provide new insights into the genetic basis of the auditory adaptation in amphibians during their transition from water to land.

摘要

背景

声音通讯对于蛙类的生存和繁殖至关重要,而遮蔽背景噪声是其有效声音通讯的关键因素。凹耳蛙(Odorrana tormota)的雄性具有超声通讯能力,以避免被当地快速流动溪流的广泛背景噪声掩盖,而雌性则没有超声敏感性。然而,O. tormota 两性之间高频听力差异的分子机制仍知之甚少。

结果

本研究对雄性和雌性 O. tormota 的大脑转录组进行了测序,并比较了它们的差异基因表达。共鉴定出 4605 个 O. tormota 两性之间的差异表达基因(DEGs),根据注释和富集分析,其中 11 个与听觉有关。这些 DEGs 在雄性中的表达量和表达量都明显高于雌性。雄性中高度表达的基因相对集中在神经发生、信号转导、离子转运和能量代谢方面,而雌性中上调表达的基因主要与特定听觉细胞的生长和发育调控有关。

结论

本研究对雄性和雌性 O. tormota 的转录组进行了测序和从头组装,这将为进一步的基因组研究提供基因参考。此外,这是首次揭示 O. tormota 两性之间超声听觉性别差异的分子机制的研究,将为两栖动物从水生到陆生过渡过程中听觉适应的遗传基础提供新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37a4/9004125/6375a8f1f192/12864_2022_8536_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37a4/9004125/145ac7476c32/12864_2022_8536_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37a4/9004125/9143a2612354/12864_2022_8536_Fig2_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37a4/9004125/caf65fb76d3f/12864_2022_8536_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37a4/9004125/6375a8f1f192/12864_2022_8536_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37a4/9004125/145ac7476c32/12864_2022_8536_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37a4/9004125/9143a2612354/12864_2022_8536_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37a4/9004125/345799f1deee/12864_2022_8536_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37a4/9004125/caf65fb76d3f/12864_2022_8536_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37a4/9004125/6375a8f1f192/12864_2022_8536_Fig5_HTML.jpg

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