Scattarella Francesco, Altamura Emiliano, Albanese Paola, Siliqi Dritan, Ladisa Massimo, Mavelli Fabio, Giannini Cinzia, Altamura Davide
Istituto di Cristallografia - CNR Via Amendola 122/O 70126 Bari Italy
Chemistry Department University of Bari Aldo Moro via Orabona 4 70125 Bari Italy.
RSC Adv. 2020 Dec 23;11(1):484-492. doi: 10.1039/d0ra08581b. eCollection 2020 Dec 21.
A mm thick free-standing gel containing lipid vesicles made of 2-oleoyl-1-palmitoyl--glycero-3-phosphocholine (POPC) was studied by scanning Small Angle X-ray Scattering (SAXS) and X-ray Transmission (XT) microscopies. Raster scanning relatively large volumes, besides reducing the risk of radiation damage, allows signal integration, improving the signal-to-noise ratio (SNR), as well as high statistical significance of the dataset. The persistence of lipid vesicles in gel was demonstrated, while mapping their spatial distribution and concentration gradients. Information about lipid aggregation and packing, as well as about gel density gradients, was obtained. confirmation of lipid presence in well-defined sample areas was obtained by studying the dried sample, featuring clear Bragg peaks from stacked bilayers. The comparison between wet and dry samples allowed it to be proved that lipids do not significantly migrate within the gel even upon drying, whereas bilayer curvature is lost by removing water, resulting in lipids packed in ordered lamellae. Suitable algorithms were successfully employed for enhancing transmission microscopy sensitivity to low absorbing objects, and allowing full SAXS intensity normalization as a general approach. In particular, data reduction includes normalization of the SAXS intensity against the local sample thickness derived from absorption contrast maps. The proposed study was demonstrated by a room-sized instrumentation, although equipped with a high brilliance X-ray micro-source, and is expected to be applicable to a wide variety of organic, inorganic, and multicomponent systems, including biomaterials. The employed routines for data reduction and microscopy, including Gaussian filter for contrast enhancement of low absorbing objects and a region growing segmentation algorithm to exclude no-sample regions, have been implemented and made freely available through the updated in-house developed software SUNBIM.
通过扫描小角X射线散射(SAXS)和X射线透射(XT)显微镜研究了一种含有由1,2-二油酰基-sn-甘油-3-磷酸胆碱(POPC)制成的脂质囊泡的毫米厚独立凝胶。光栅扫描相对较大的体积,除了降低辐射损伤风险外,还允许信号积分,提高信噪比(SNR),以及数据集的高统计显著性。在绘制脂质囊泡的空间分布和浓度梯度时,证明了脂质囊泡在凝胶中的持久性。获得了有关脂质聚集和堆积以及凝胶密度梯度的信息。通过研究干燥样品获得了在明确的样品区域中脂质存在的确认,干燥样品具有来自堆叠双层的清晰布拉格峰。湿样品和干样品之间的比较证明,即使在干燥时脂质也不会在凝胶内显著迁移,而通过除去水会失去双层曲率,导致脂质以有序的薄片形式堆积。成功采用了合适的算法来提高透射显微镜对低吸收物体的灵敏度,并允许将SAXS强度完全归一化作为一种通用方法。特别是,数据缩减包括根据从吸收对比图得出的局部样品厚度对SAXS强度进行归一化。尽管配备了高亮度X射线微源,但所提出的研究是通过一个房间大小的仪器进行的,并且有望适用于包括生物材料在内的各种有机、无机和多组分系统。所采用的数据缩减和显微镜检查程序,包括用于增强低吸收物体对比度的高斯滤波器和用于排除无样品区域的区域生长分割算法,已经通过更新的内部开发软件SUNBIM实现并免费提供。