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Hsa-miR-422a 来源于短散在核元件,通过与 NF-E2 协作增加表达。

Hsa-miR-422a Originated from Short Interspersed Nuclear Element Increases Expression by Collaborating with NF-E2.

机构信息

Department of Integrated Biological Science, Pusan National University, Busan 46241, Korea.

Institute of Systems Biology, Pusan National University, Busan 46241, Korea.

出版信息

Mol Cells. 2022 Jul 31;45(7):465-478. doi: 10.14348/molcells.2022.2158. Epub 2022 Apr 20.

Abstract

MicroRNAs (miRNAs) are a class of small non-coding RNAs that regulate the expression of target messenger RNA (mRNA) complementary to the 3' untranslated region (UTR) at the post-transcriptional level. Hsa-miR-422a, which is commonly known as miRNA derived from transposable element (MDTE), was derived from short interspersed nuclear element (SINE). Through expression analysis, hsa-miR-422a was found to be highly expressed in both the small intestine and liver of crab-eating monkey. AT-Rich Interaction Domain 5 B () was selected as the target gene of hsa-miR-422a, which has two binding sites in both the exon and 3'UTR of . To identify the interaction between hsa-miR-422a and , a dual luciferase assay was conducted in HepG2 cell line. The luciferase activity of cells treated with the hsa-miR-422a mimic was upregulated and inversely downregulated when both the hsa-miR-422a mimic and inhibitor were administered. Nuclear factor erythroid-2 (NF-E2) was selected as the core transcription factor (TF) via feed forward loop analysis. The luciferase expression was downregulated when both the hsa-miR-422a mimic and siRNA of NF-E2 were treated, compared to the treatment of the hsa-miR-422a mimic alone. The present study suggests that hsa-miR-422a derived from SINE could bind to the exon region as well as the 3'UTR of . Additionally, hsa-miR-422a was found to share binding sites in with several TFs, including NF-E2. The hsa-miR-422a might thus interact with TF to regulate the expression of , as demonstrated experimentally. Altogether, hsa-miR-422a acts as a super enhancer miRNA of by collaborating with TF and NF-E2.

摘要

微小 RNA(miRNAs)是一类小的非编码 RNA,通过与信使 RNA(mRNA)的 3'非翻译区(UTR)互补,在转录后水平调节靶基因的表达。hsa-miR-422a,通常被称为源自转座元件的 miRNA(MDTE),来源于短散在核元件(SINE)。通过表达分析,发现 hsa-miR-422a 在食蟹猴的小肠和肝脏中均高度表达。AT-富含互作域 5B()被选为 hsa-miR-422a 的靶基因,该基因在的外显子和 3'UTR 中均有两个结合位点。为了鉴定 hsa-miR-422a 与的相互作用,在 HepG2 细胞系中进行了双荧光素酶测定。用 hsa-miR-422a 模拟物处理的细胞的荧光素酶活性上调,当同时给予 hsa-miR-422a 模拟物和抑制剂时则相反。通过前馈环分析,选择核因子红细胞 2(NF-E2)作为核心转录因子(TF)。当同时用 hsa-miR-422a 模拟物和 NF-E2 的 siRNA 处理时,与单独用 hsa-miR-422a 模拟物处理相比,荧光素酶表达下调。本研究表明,源自 SINE 的 hsa-miR-422a 可以与结合,不仅结合在 3'UTR 上,还结合在外显子区域。此外,hsa-miR-422a 与包括 NF-E2 在内的几个 TF 共享结合位点。因此,hsa-miR-422a 可能通过与 TF 相互作用来调节的表达,这在实验中得到了证实。总的来说,hsa-miR-422a 作为一个超级增强子 miRNA,通过与 TF 和 NF-E2 合作来调节的表达。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b96b/9260135/200c4ba0cc6e/molce-45-7-465-f8.jpg

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