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一种马达蛋白 kinesin-1 前后运动的机械化学模型。

A mechanochemical model of the forward/backward movement of motor protein kinesin-1.

机构信息

Shanghai Key Laboratory for Contemporary Applied Mathematics, School of Mathematical Sciences, Fudan University, Shanghai, China.

Shanghai Key Laboratory for Contemporary Applied Mathematics, School of Mathematical Sciences, Fudan University, Shanghai, China.

出版信息

J Biol Chem. 2022 Jun;298(6):101948. doi: 10.1016/j.jbc.2022.101948. Epub 2022 Apr 18.

DOI:10.1016/j.jbc.2022.101948
PMID:35447112
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9117889/
Abstract

Kinesin-1 is an ATP-driven, two-headed motor protein that transports intracellular cargoes (loads) along microtubules. The movement of kinesin-1 has generally been modeled according to its correlation with ATP cleavage (forward movement), synthesis (backward movement), or unproductive cleavage (futile consumption). Based on recent experimental observations, we formulate a mechanochemical model for this movement in which the forward/backward/futile cycle can be realized through multiple biochemical pathways. Our results show that the backward motion of kinesin-1 occurs mainly through backward sliding along the microtubule and is usually also coupled with ATP hydrolysis. We also found that with a low external load, about 80% of ATP is wasted (futile consumption) by kinesin-1. Furthermore, at high ATP concentrations or under high external loads, both heads of kinesin-1 are always in the ATP- or ADP ⋅ Pi-binding state and tightly bound to the microtubule, while at low ATP concentrations and low loads, kinesin-1 is mainly in the one-head-bound state. Unless the external load is near the stall force, the motion of kinesin-1 is almost deterministic.

摘要

驱动蛋白-1 是一种 ATP 驱动的、双头的马达蛋白,可沿微管运输细胞内货物(负荷)。驱动蛋白-1 的运动通常根据其与 ATP 裂解(前进运动)、合成(后退运动)或无效裂解(无效消耗)的相关性来建模。基于最近的实验观察,我们为这种运动制定了一个机械化学模型,其中可以通过多种生化途径实现前进/后退/无效循环。我们的结果表明,驱动蛋白-1 的后退运动主要通过沿微管向后滑动发生,通常也与 ATP 水解偶联。我们还发现,在低外部负载下,驱动蛋白-1 大约 80%的 ATP 被浪费(无效消耗)。此外,在高 ATP 浓度或高外部负载下,驱动蛋白-1 的两个头部始终处于 ATP 或 ADP ⋅ Pi 结合状态并紧密结合到微管上,而在低 ATP 浓度和低负载下,驱动蛋白-1 主要处于单头部结合状态。除非外部负载接近失速力,否则驱动蛋白-1 的运动几乎是确定的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4812/9117889/939a1e5cd38f/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4812/9117889/1126cd7c7a05/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4812/9117889/e71fdc6264c4/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4812/9117889/31a54f60250c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4812/9117889/fcee60d7f761/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4812/9117889/e429a3dfe13c/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4812/9117889/939a1e5cd38f/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4812/9117889/1126cd7c7a05/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4812/9117889/e71fdc6264c4/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4812/9117889/31a54f60250c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4812/9117889/fcee60d7f761/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4812/9117889/e429a3dfe13c/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4812/9117889/939a1e5cd38f/gr6.jpg

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本文引用的文献

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2
Nonequilibrium Energetics of Molecular Motor Kinesin.分子马达肌球蛋白的非平衡能量学。
Phys Rev Lett. 2018 Nov 23;121(21):218101. doi: 10.1103/PhysRevLett.121.218101.
3
Phenomenological analysis of ATP dependence of motor proteins.现象学分析 ATP 依赖性的运动蛋白。
PLoS One. 2012;7(3):e32717. doi: 10.1371/journal.pone.0032717. Epub 2012 Mar 23.
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A universal pathway for kinesin stepping.驱动蛋白行走的通用途径。
Nat Struct Mol Biol. 2011 Aug 14;18(9):1020-7. doi: 10.1038/nsmb.2104.
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Insights into the Mechanical Properties of the Kinesin Neck Linker Domain from Sequence Analysis and Molecular Dynamics Simulations.通过序列分析和分子动力学模拟洞察驱动蛋白颈部连接域的力学性质
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Why kinesin is so processive.为什么驱动蛋白具有如此高的持续性。
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