Microbial Type Culture Collection & Gene Bank (MTCC), CSIR-Institute of Microbial Technology, Sec-39A, Chandigarh 160036, India.
Biomolecules. 2022 Mar 23;12(4):489. doi: 10.3390/biom12040489.
Most of the research on bioremediation and estimation of microbial diversity in waste contaminated sites is focused on the domain , whereas details on the relevance of are still lacking. The present study examined the archaeal diversity and predicted metabolic pathways in two discrete sites (SITE1 and SITE2) contaminated with explosives (RDX and HMX) by amplicon-targeted sequencing of 16S rRNA genes. In total, 14 soil samples were processed, and 35,758 OTUs were observed, among which 981 OTUs were classified as , representing 2.7% of the total microbial diversity in our samples. The majority of OTUs belonged to phyla (49%), (24%), and (23%), while the remaining (~4%) OTUs were affiliated to Parvarchaeota, Aenigmarchaeota, and Diapherotrites. The comparative studies between explosives contaminated and agricultural soil samples (with no history of explosives contamination) displayed significant differences between the compositions of the archaeal communities. Further, the metabolic pathways pertaining to xenobiotic degradation were presumably more abundant in the contaminated sites. Our data provide a first comprehensive report of archaeal communities in explosives contaminated sites and their putative degradation role in such ecosystems which have been as yet unexplored.
大多数关于生物修复和污染场地微生物多样性评估的研究都集中在域,而关于的相关性的细节仍然缺乏。本研究通过扩增子靶向测序 16S rRNA 基因,检测了两个分别受到爆炸物(RDX 和 HMX)污染的离散地点(SITE1 和 SITE2)中的古菌多样性和预测代谢途径。总共处理了 14 个土壤样本,观察到 35758 个 OTUs,其中 981 个 OTUs被分类为,约占我们样本中总微生物多样性的 2.7%。大多数 OTUs 属于门(49%)、(24%)和(23%),而其余的(4%)OTUs则隶属于 Parvarchaeota、Aenigmarchaeota 和 Diapherotrites。对受爆炸物污染和无爆炸物污染农业土壤样本(无爆炸物污染历史)的比较研究显示,古菌群落的组成存在显著差异。此外,推测在污染地点,与外来物质降解相关的代谢途径更为丰富。我们的数据提供了爆炸物污染场地古菌群落及其在这些尚未探索的生态系统中潜在降解作用的首次全面报告。