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利用下一代测序技术对 进行 基因多态性的分子特征分析。

Molecular characterization of through gene polymorphism using next-generation sequencing technology.

机构信息

Centre of Biotechnology & Microbiology, University of Peshawar, KP, 25120, Pakistan.

Provincial Tuberculosis Reference Laboratory, Peshawar, KP, 25120, Pakistan.

出版信息

Future Microbiol. 2022 Jul;17:763-772. doi: 10.2217/fmb-2020-0231. Epub 2022 Apr 27.

Abstract

To characterize and analyze polymorphism of the gene and evaluate AgMPT64-based immunochromatographic assay (ICA) specificity associated with polymorphism. A total of 1449 suspected samples were tested for tuberculosis (TB), and the / gene was sequenced using next-generation sequencing for polymorphism analysis. Of the TB-positive individuals, 200 (13.80%), 186 (12.84%) and 129 (8.90%) were positive using the liquid culture, GeneXpert and fluorescence microscopy assays, respectively. Liquid culture medium-based samples were confirmed using ICA, in which 193 (96.5%) were positive while seven (3.5%) were negative. Out of 14 sequenced samples, seven were positive and seven negative; 13 were identical to the reference and just one (ICA positive) showed a C477A point mutation (F159L). The results indicate that AgMPT64 can be considered as a potent vaccine candidate.

摘要

为了描述和分析基因的多态性,并评估与多态性相关的基于 AgMPT64 的免疫层析检测法(ICA)的特异性,我们对 1449 份疑似结核病(TB)样本进行了检测,采用下一代测序技术对基因进行了测序,以进行多态性分析。在 TB 阳性个体中,分别有 200 例(13.80%)、186 例(12.84%)和 129 例(8.90%)通过液体培养、GeneXpert 和荧光显微镜检测呈阳性。对液体培养物为阳性的样本进行了 ICA 检测,其中 193 例(96.5%)为阳性,7 例(3.5%)为阴性。在 14 个测序样本中,有 7 个为阳性,7 个为阴性;13 个与参考序列相同,只有一个(ICA 阳性)显示 C477A 点突变(F159L)。结果表明,AgMPT64 可被视为一种有潜力的疫苗候选物。

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