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加权基因共表达网络分析(WGCNA)揭示了一组与小球藻(Chlorella vulgaris)响应雄烯二酮过程中的叶绿素代谢相关的枢纽基因。

Weighted gene Co-expression network analysis (WGCNA) reveals a set of hub genes related to chlorophyll metabolism process in chlorella (Chlorella vulgaris) response androstenedione.

机构信息

School of Life Science and Bioengineering, Jining University, Jining 273155, China.

School of Engineering, Jining University, Jining 273155, China.

出版信息

Environ Pollut. 2022 Aug 1;306:119360. doi: 10.1016/j.envpol.2022.119360. Epub 2022 Apr 27.

Abstract

Androstenedione (ADSD) was the main androgen detected in wastewaters. Chlorella was the most widely used plant in biological wastewater treatment process. In order to understand the toxicological response of chlorella to ADSD contamination, we used the weighted gene co-expression network analysis (WGCNA) method to systematically analyze the gene regulatory networks of chlorella after ADSD treatments. Total of 25 modules was identified from gene co-expression networks, and the turquoise module were selected for GO and KEGG enrichment analysis. Results showed that most hub genes were associated with chloroplast organizations or photosystems processes. Among them, the expressions profiles of hcar, nol, pao and sgr genes were highly correlated to the content fluctuations of chlorophylls after different ADSD treatments. All these results demonstrated that chlorophylls play a key role in preventing cell damage of chlorella caused by ADSD contamination. Besides, we proposed a possible chlorophyll metabolism pathway in chlorella response to ADSD contamination.

摘要

雄烯二酮(ADSD)是废水中主要的雄激素。小球藻是生物废水处理过程中最广泛使用的植物。为了了解小球藻对 ADSD 污染的毒理学反应,我们使用加权基因共表达网络分析(WGCNA)方法系统分析了 ADSD 处理后小球藻的基因调控网络。从基因共表达网络中共鉴定出 25 个模块,并选择了 turquoise 模块进行 GO 和 KEGG 富集分析。结果表明,大多数枢纽基因与叶绿体组织或光合作用过程有关。其中,hcar、nol、pao 和 sgr 基因的表达谱与不同 ADSD 处理后叶绿素含量的波动高度相关。所有这些结果表明,叶绿素在防止 ADSD 污染导致的小球藻细胞损伤中起着关键作用。此外,我们提出了小球藻对 ADSD 污染反应中可能的叶绿素代谢途径。

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