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评估 BD Max™ 肠道细菌检测 panel 在新加坡人群中对急性肠胃炎病原体进行分子检测的临床灵敏度和特异性。

Evaluation of the clinical sensitivity and specificity of the BD Max™ Enteric Bacterial Panel for molecular detection of pathogens for acute gastroenteritis in the Singaporean population.

机构信息

Clinical Trials and Research Unit, Changi General Hospital, 2 Simei Street 3, Singapore 529889, Singapore.

Department of Laboratory Medicine, Changi General Hospital, 2 Simei Street 3, Singapore 529889, Singapore.

出版信息

J Microbiol Methods. 2022 Jun;197:106478. doi: 10.1016/j.mimet.2022.106478. Epub 2022 Apr 30.

Abstract

PURPOSE

Acute gastroenteritis (AGE) is caused by a wide range of pathogens. Culture methods for the detection of bacterial pathogens is time consuming and labour intensive. This study compared a same-day-to-result commercial molecular method using BD Max™ Enteric Bacterial Panel against conventional culture and laboratory-developed PCR assays (LDTs), and characterised the epidemiology of bacterial AGE in Singapore.

METHODOLOGY

PCRs for Campylobacter spp., Salmonella spp., Shigella spp./Enteroinvasive Escherichia coli (EIEC) and Shiga toxin-producing E. coli (STEC)/Shigella dysenteriae were performed on the BD Max™ platform. Concurrent routine bacterial culture ("reference standard") was performed for Campylobacter, Salmonella, Shigella, Vibrio and Aeromonas spp. In the event of a discrepancy, an "expanded reference standard" (bacterial culture with LDT) was used.

RESULTS

There were 299 stool specimens in the study, with no bacterial pathogens detected in 190 samples (63.5%). The positive samples (n = 109,36.5%) were detected with Salmonella (n = 57,19.1%), Campylobacter (n = 28,9.4%), Vibrio parahaemolyticus (n = 6,2.0%), Shigella/EIEC (n = 6,2.0%), ETEC (n = 4,1.3%), STEC (n = 2,0.7%), Aeromonas (n = 2,0.7%), Plesiomonas shigelloides (n = 1,0.3%) and 3(1.0%) co-infections. Compared to the "expanded reference standard", conventional culture missed 38/112 (33.9%) pathogens. Conversely, testing by BD Max™ alone failed to detect 17 pathogens. BD Max™ reported seven (2.3%) false-positive results.

CONCLUSIONS

BD Max™ increased the detection rate of bacterial AGE pathogens in the panel, but was limited by the absence of detection capability for Vibrio and Aeromonas spp.

摘要

目的

急性肠胃炎(AGE)由多种病原体引起。用于检测细菌病原体的培养方法既费时又费力。本研究比较了一种当日得出结果的商业分子方法(BD Max™ Enteric Bacterial Panel)与传统培养和实验室开发的聚合酶链反应检测(LDT),并描述了新加坡细菌性 AGE 的流行病学特征。

方法

在 BD Max™ 平台上进行弯曲杆菌属、沙门氏菌属、志贺氏菌属/侵袭性大肠杆菌(EIEC)和产志贺毒素大肠杆菌(STEC)/志贺氏痢疾杆菌的 PCR。同时对弯曲杆菌、沙门氏菌、志贺氏菌、弧菌和气单胞菌进行常规细菌培养(“参考标准”)。如果存在差异,则使用“扩展参考标准”(细菌培养加 LDT)。

结果

研究共纳入 299 份粪便标本,190 份(63.5%)标本未检出细菌病原体。阳性样本(n=109,36.5%)中检出沙门氏菌(n=57,19.1%)、弯曲杆菌(n=28,9.4%)、副溶血性弧菌(n=6,2.0%)、志贺氏菌/ EIEC(n=6,2.0%)、肠产毒性大肠杆菌(n=4,1.3%)、STEC(n=2,0.7%)、气单胞菌(n=2,0.7%)、类志贺邻单胞菌(n=1,0.3%)和 3 种(1.0%)混合感染。与“扩展参考标准”相比,传统培养漏检 38/112(33.9%)病原体。相反,BD Max™ 单独检测漏检 17 种病原体。BD Max™ 报告了 7 个(2.3%)假阳性结果。

结论

BD Max™ 提高了该检测组中细菌性 AGE 病原体的检出率,但由于缺乏对弧菌和气单胞菌的检测能力而受到限制。

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