Clinical Trials and Research Unit, Changi General Hospital, 2 Simei Street 3, Singapore 529889, Singapore.
Department of Laboratory Medicine, Changi General Hospital, 2 Simei Street 3, Singapore 529889, Singapore.
J Microbiol Methods. 2022 Jun;197:106478. doi: 10.1016/j.mimet.2022.106478. Epub 2022 Apr 30.
Acute gastroenteritis (AGE) is caused by a wide range of pathogens. Culture methods for the detection of bacterial pathogens is time consuming and labour intensive. This study compared a same-day-to-result commercial molecular method using BD Max™ Enteric Bacterial Panel against conventional culture and laboratory-developed PCR assays (LDTs), and characterised the epidemiology of bacterial AGE in Singapore.
PCRs for Campylobacter spp., Salmonella spp., Shigella spp./Enteroinvasive Escherichia coli (EIEC) and Shiga toxin-producing E. coli (STEC)/Shigella dysenteriae were performed on the BD Max™ platform. Concurrent routine bacterial culture ("reference standard") was performed for Campylobacter, Salmonella, Shigella, Vibrio and Aeromonas spp. In the event of a discrepancy, an "expanded reference standard" (bacterial culture with LDT) was used.
There were 299 stool specimens in the study, with no bacterial pathogens detected in 190 samples (63.5%). The positive samples (n = 109,36.5%) were detected with Salmonella (n = 57,19.1%), Campylobacter (n = 28,9.4%), Vibrio parahaemolyticus (n = 6,2.0%), Shigella/EIEC (n = 6,2.0%), ETEC (n = 4,1.3%), STEC (n = 2,0.7%), Aeromonas (n = 2,0.7%), Plesiomonas shigelloides (n = 1,0.3%) and 3(1.0%) co-infections. Compared to the "expanded reference standard", conventional culture missed 38/112 (33.9%) pathogens. Conversely, testing by BD Max™ alone failed to detect 17 pathogens. BD Max™ reported seven (2.3%) false-positive results.
BD Max™ increased the detection rate of bacterial AGE pathogens in the panel, but was limited by the absence of detection capability for Vibrio and Aeromonas spp.
急性肠胃炎(AGE)由多种病原体引起。用于检测细菌病原体的培养方法既费时又费力。本研究比较了一种当日得出结果的商业分子方法(BD Max™ Enteric Bacterial Panel)与传统培养和实验室开发的聚合酶链反应检测(LDT),并描述了新加坡细菌性 AGE 的流行病学特征。
在 BD Max™ 平台上进行弯曲杆菌属、沙门氏菌属、志贺氏菌属/侵袭性大肠杆菌(EIEC)和产志贺毒素大肠杆菌(STEC)/志贺氏痢疾杆菌的 PCR。同时对弯曲杆菌、沙门氏菌、志贺氏菌、弧菌和气单胞菌进行常规细菌培养(“参考标准”)。如果存在差异,则使用“扩展参考标准”(细菌培养加 LDT)。
研究共纳入 299 份粪便标本,190 份(63.5%)标本未检出细菌病原体。阳性样本(n=109,36.5%)中检出沙门氏菌(n=57,19.1%)、弯曲杆菌(n=28,9.4%)、副溶血性弧菌(n=6,2.0%)、志贺氏菌/ EIEC(n=6,2.0%)、肠产毒性大肠杆菌(n=4,1.3%)、STEC(n=2,0.7%)、气单胞菌(n=2,0.7%)、类志贺邻单胞菌(n=1,0.3%)和 3 种(1.0%)混合感染。与“扩展参考标准”相比,传统培养漏检 38/112(33.9%)病原体。相反,BD Max™ 单独检测漏检 17 种病原体。BD Max™ 报告了 7 个(2.3%)假阳性结果。
BD Max™ 提高了该检测组中细菌性 AGE 病原体的检出率,但由于缺乏对弧菌和气单胞菌的检测能力而受到限制。