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蜘蛛丝作为 eDNA 采样器:生命之树的生物多样性评估。

Spider webs as eDNA samplers: Biodiversity assessment across the tree of life.

机构信息

Jovan Hadži Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Ljubljana, Slovenia.

Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.

出版信息

Mol Ecol Resour. 2022 Oct;22(7):2534-2545. doi: 10.1111/1755-0998.13629. Epub 2022 May 16.

DOI:10.1111/1755-0998.13629
PMID:35510791
Abstract

The concept of environmental DNA (eDNA) utilizes nucleic acids of organisms directly from the environment. Recent breakthrough studies have successfully detected a wide spectrum of prokaryotic and eukaryotic eDNA from a variety of environments, ranging from ancient to modern, and from terrestrial to aquatic. With their diversity and ubiquity in nature, spider webs might act as powerful biofilters and could thus represent a promising new source of eDNA, but their utility under natural field conditions is severely understudied. Here, we bridge this knowledge gap to establish spider webs as a source of eDNA with far reaching implications. First, we conducted a field study to track specific arthropod targets from different spider webs. We then used high-throughput amplicon sequencing of taxonomic barcodes to investigate the utility of spider web eDNA for biodiversity monitoring of animals, fungi and bacteria. Our results show that genetic remains on spider webs allow the detection of even the smallest target organisms. We also demonstrate that eDNA from spider webs is useful in research of community compositions across the different domains of life, with potentially highly detailed temporal and spatial information.

摘要

环境 DNA(eDNA)的概念利用了生物体直接来自环境的核酸。最近的突破性研究成功地从各种环境中检测到了广泛的原核生物和真核生物 eDNA,从远古到现代,从陆地到水生。由于它们在自然界中的多样性和普遍性,蜘蛛网可能充当强大的生物过滤器,因此可能成为 eDNA 的一个有前途的新来源,但它们在自然野外条件下的实用性尚未得到充分研究。在这里,我们弥补了这一知识空白,确立了蜘蛛网作为 eDNA 来源的地位,具有深远的意义。首先,我们进行了一项实地研究,追踪来自不同蜘蛛网的特定节肢动物目标。然后,我们使用分类条形码的高通量扩增子测序来调查蜘蛛网 eDNA 用于动物、真菌和细菌生物多样性监测的实用性。我们的结果表明,蜘蛛网上的遗传残留物允许检测到即使是最小的目标生物。我们还证明,来自蜘蛛网的 eDNA 可用于研究不同生命领域的群落组成,具有潜在的高度详细的时间和空间信息。

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