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存在于[-PS]-(DNA#LNA)嵌合体中的锁核酸(LNA)单元增强了与(2'-O-甲基)-RNA链形成的平行双链体和三链体的热稳定性。

LNA units present in [ -PS]-(DNA#LNA) chimeras enhance the thermal stability of parallel duplexes and triplexes formed with (2'-OMe)-RNA strands.

作者信息

Jastrzębska Katarzyna, Mikołajczyk Barbara, Guga Piotr

机构信息

Department of Bioorganic Chemistry, Centre of Molecular and Macromolecular Studies, Polish Academy of Sciences Sienkiewicza 112 90-363 Łódź Poland

出版信息

RSC Adv. 2020 Jun 10;10(38):22370-22376. doi: 10.1039/d0ra03934a.

Abstract

The results of CD measurements indicate that 2-4 LNA units distributed along 12 nt P-stereodefined phosphorothioate [ -PS]-(DNA#LNA) chimeras impose a C3'- conformation on the 2'-deoxyribonucleosides. Under neutral and slightly acidic conditions homopurine [ -PS]-(DNA#LNA) hybridizes with 9-12 nt Hoogsteen-paired (2'-OMe)-RNA strands to form parallel duplexes, which are thermally more stable than the reported earlier analogous complexes containing LNA-free [ -PS]-DNA oligomers (Δ = 7 °C per LNA unit at pH 5.4). Upon addition of the corresponding Watson-Crick-paired (2'-OMe)-RNA strands, parallel triplexes are formed with further increased thermal stability.

摘要

圆二色光谱测量结果表明,沿着12个核苷酸的P-立体定向硫代磷酸酯[-PS]-(DNA#LNA)嵌合体分布的2 - 4个LNA单元会使2'-脱氧核糖核苷呈现C3'-构象。在中性和略酸性条件下,同型嘌呤[-PS]-(DNA#LNA)与9 - 12个核苷酸的Hoogsteen配对(2'-OMe)-RNA链杂交形成平行双链体,其热稳定性比早期报道的不含LNA的[-PS]-DNA寡聚物的类似复合物更高(在pH 5.4时,每个LNA单元的Δ = 7℃)。加入相应的沃森-克里克配对(2'-OMe)-RNA链后,会形成热稳定性进一步提高的平行三链体。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1ed/9054617/a2e6cb1386c3/d0ra03934a-c1.jpg

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