Gao Yunna, Han Caijing, Liu Chunlei, Wang Ji, Zhao Lan, Fang Li, Min Weihong
College of Food Science and Engineering, Jilin Agricultural University Changchun 130118 China
National Engineering Laboratory of Wheat and Corn Deep Processing Changchun 130118 China
RSC Adv. 2019 Jul 9;9(37):21344-21354. doi: 10.1039/c9ra03293b. eCollection 2019 Jul 5.
A novel aspartokinase mutant M372I/T379W from was constructed by using site-directed mutagenesis. The enzyme was then purified, characterized, and its molecular mechanism was comprehensively analyzed. Compared with wild-type AK, the catalytic activity of M372I/T379W AK was 16.51 fold higher and the optimum temperature increased from 28 to 35 °C. The thermostability of M372I/T379W AK was significantly improved. Microscale thermophoresis analysis indicated that M372I/T379W AK not only weakened the inhibitory effect of Lys, but also had stronger binding force with Asp. Molecular dynamics simulation showed that mutations M372I and T379W could regulate the activity of CpAK through affecting the flexibility of Asp and ATP binding pocket residues and the hydrogen bond between CpAK and Asp. In addition, mutations could affect the relative position of protein domains. The width of the Asp binding pocket entrance gate Arg169-Ala60 of M372I/T379W AK was greater than that in wild-type AK and the CpAK switched from T-state to R-state, which promoted the binding of the enzyme to Asp and improving the catalytic efficiency of this enzyme. These results explain the molecular mechanism of M372I/T379W AK, which will greatly facilitate the rational design of more aspartokinase mutants, with have potential applications in aspartic acid metabolism.
通过定点诱变构建了一种来自[具体来源未提及]的新型天冬氨酸激酶突变体M372I/T379W。然后对该酶进行了纯化、表征,并对其分子机制进行了全面分析。与野生型天冬氨酸激酶(AK)相比,M372I/T379W AK的催化活性提高了16.51倍,最适温度从28℃提高到35℃。M372I/T379W AK的热稳定性显著提高。微量热泳分析表明,M372I/T379W AK不仅减弱了赖氨酸的抑制作用,而且与天冬氨酸具有更强的结合力。分子动力学模拟表明,M372I和T379W突变可通过影响天冬氨酸和ATP结合口袋残基的灵活性以及CpAK与天冬氨酸之间的氢键来调节CpAK的活性。此外,突变可影响蛋白质结构域的相对位置。M372I/T379W AK的天冬氨酸结合口袋入口门Arg169-Ala60的宽度大于野生型AK,且CpAK从T态转变为R态,这促进了酶与天冬氨酸的结合并提高了该酶的催化效率。这些结果解释了M372I/T379W AK的分子机制,这将极大地促进更多天冬氨酸激酶突变体的合理设计,这些突变体在天冬氨酸代谢中具有潜在应用。