Suppr超能文献

来自……的新型天冬氨酸激酶突变体M372I/T379W的酶学特性及分子机制

Enzymatic characterization and molecular mechanism of a novel aspartokinase mutant M372I/T379W from .

作者信息

Gao Yunna, Han Caijing, Liu Chunlei, Wang Ji, Zhao Lan, Fang Li, Min Weihong

机构信息

College of Food Science and Engineering, Jilin Agricultural University Changchun 130118 China

National Engineering Laboratory of Wheat and Corn Deep Processing Changchun 130118 China

出版信息

RSC Adv. 2019 Jul 9;9(37):21344-21354. doi: 10.1039/c9ra03293b. eCollection 2019 Jul 5.

Abstract

A novel aspartokinase mutant M372I/T379W from was constructed by using site-directed mutagenesis. The enzyme was then purified, characterized, and its molecular mechanism was comprehensively analyzed. Compared with wild-type AK, the catalytic activity of M372I/T379W AK was 16.51 fold higher and the optimum temperature increased from 28 to 35 °C. The thermostability of M372I/T379W AK was significantly improved. Microscale thermophoresis analysis indicated that M372I/T379W AK not only weakened the inhibitory effect of Lys, but also had stronger binding force with Asp. Molecular dynamics simulation showed that mutations M372I and T379W could regulate the activity of CpAK through affecting the flexibility of Asp and ATP binding pocket residues and the hydrogen bond between CpAK and Asp. In addition, mutations could affect the relative position of protein domains. The width of the Asp binding pocket entrance gate Arg169-Ala60 of M372I/T379W AK was greater than that in wild-type AK and the CpAK switched from T-state to R-state, which promoted the binding of the enzyme to Asp and improving the catalytic efficiency of this enzyme. These results explain the molecular mechanism of M372I/T379W AK, which will greatly facilitate the rational design of more aspartokinase mutants, with have potential applications in aspartic acid metabolism.

摘要

通过定点诱变构建了一种来自[具体来源未提及]的新型天冬氨酸激酶突变体M372I/T379W。然后对该酶进行了纯化、表征,并对其分子机制进行了全面分析。与野生型天冬氨酸激酶(AK)相比,M372I/T379W AK的催化活性提高了16.51倍,最适温度从28℃提高到35℃。M372I/T379W AK的热稳定性显著提高。微量热泳分析表明,M372I/T379W AK不仅减弱了赖氨酸的抑制作用,而且与天冬氨酸具有更强的结合力。分子动力学模拟表明,M372I和T379W突变可通过影响天冬氨酸和ATP结合口袋残基的灵活性以及CpAK与天冬氨酸之间的氢键来调节CpAK的活性。此外,突变可影响蛋白质结构域的相对位置。M372I/T379W AK的天冬氨酸结合口袋入口门Arg169-Ala60的宽度大于野生型AK,且CpAK从T态转变为R态,这促进了酶与天冬氨酸的结合并提高了该酶的催化效率。这些结果解释了M372I/T379W AK的分子机制,这将极大地促进更多天冬氨酸激酶突变体的合理设计,这些突变体在天冬氨酸代谢中具有潜在应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9814/9066179/7868eb777d7e/c9ra03293b-f1.jpg

相似文献

1
Enzymatic characterization and molecular mechanism of a novel aspartokinase mutant M372I/T379W from .
RSC Adv. 2019 Jul 9;9(37):21344-21354. doi: 10.1039/c9ra03293b. eCollection 2019 Jul 5.
3
Characterization of aspartokinase double mutants using a combination of experiments and simulations.
Heliyon. 2023 Jan 28;9(2):e13133. doi: 10.1016/j.heliyon.2023.e13133. eCollection 2023 Feb.
4
Characterization of Aspartate Kinase from Corynebacterium pekinense and the Critical Site of Arg169.
Int J Mol Sci. 2015 Nov 27;16(12):28270-84. doi: 10.3390/ijms161226098.
6
Mechanism of the feedback-inhibition resistance in aspartate kinase of : from experiment to MD simulations.
RSC Adv. 2020 Dec 22;11(1):30-38. doi: 10.1039/d0ra09153g. eCollection 2020 Dec 21.
7
Improved catalytic activity of a novel aspartate kinase by site-directed saturation mutagenesis.
Bioprocess Biosyst Eng. 2022 Mar;45(3):541-551. doi: 10.1007/s00449-021-02677-6. Epub 2022 Jan 23.
9
Enhancing the thermostability of fumarase C from Corynebacterium glutamicum via molecular modification.
Enzyme Microb Technol. 2018 Aug;115:45-51. doi: 10.1016/j.enzmictec.2018.04.010. Epub 2018 Apr 25.

引用本文的文献

1
Mechanism of the feedback-inhibition resistance in aspartate kinase of : from experiment to MD simulations.
RSC Adv. 2020 Dec 22;11(1):30-38. doi: 10.1039/d0ra09153g. eCollection 2020 Dec 21.

本文引用的文献

2
4
Inhibitory Effect of Naphthoquinone-Tryptophan Hybrid towards Aggregation of PAP f39 Semen Amyloid.
Molecules. 2018 Dec 11;23(12):3279. doi: 10.3390/molecules23123279.
5
Probing inhibition mechanisms of adenosine deaminase by using molecular dynamics simulations.
PLoS One. 2018 Nov 16;13(11):e0207234. doi: 10.1371/journal.pone.0207234. eCollection 2018.
6
S-allyl cysteine as potent anti-gout drug: Insight into the xanthine oxidase inhibition and anti-inflammatory activity.
Biochimie. 2018 Nov;154:1-9. doi: 10.1016/j.biochi.2018.07.015. Epub 2018 Jul 27.
7
Mechanistic insights into the allosteric regulation of aspartate kinase.
Biochem J. 2018 Mar 20;475(6):1107-1119. doi: 10.1042/BCJ20170829.
8
Guanine quadruplex monoclonal antibody 1H6 cross-reacts with restrained thymidine-rich single stranded DNA.
Nucleic Acids Res. 2017 Jun 2;45(10):5913-5919. doi: 10.1093/nar/gkx245.
9
Identification of enzymes involved in the mevalonate pathway of Flavobacterium johnsoniae.
Biochem Biophys Res Commun. 2017 Jun 3;487(3):702-708. doi: 10.1016/j.bbrc.2017.04.120. Epub 2017 Apr 23.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验