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特定启动子串联重复元件的双重作用:整合表观遗传沉默与热响应。

Dual role of specific promoter tandem repeats integrating epigenetic silencing with heat response.

机构信息

IFEVA (CONICET-UBA), Facultad de Agronomía, Universidad de Buenos Aires, Buenos Aires, Argentina.

出版信息

Physiol Plant. 2022 May;174(3):e13694. doi: 10.1111/ppl.13694.

Abstract

Satellites are ubiquitous noncoding tandemly repeated sequences, yet knowledge about their biological relevance is still scarce. In plants, the few described cases point to roles in heterochromatin biology and gene regulation; however, a direct link to plant stress responses is yet to be uncovered. We present evidence that particular non-centromere tandem repeats may display a central regulatory role in the intersection between epigenetic silencing and gene expression in dynamic environments. Within the projected promoter of Arabidopsis thaliana's imprinted SDC locus, a transcriptional gene silencing targeted tandem-repeated area largely mediates epigenetic suppression and imprinting. Here, we show that this area, possibly acting as a cis-element/enhancer, appears necessary and sufficient for SDC's heat transcriptional activity in vegetative tissues. Our results indicate that these particular noncoding tandem repeats may be genic and exhibit dual roles, not only as silencers at normal temperatures but also facilitating expression upon stress. An unusual adaptive form of abiotic transcriptional control unrelated to canonical heat signaling is implied, emphasizing a potential importance of genomic satellites for plant environmental epigenetics.

摘要

卫星是普遍存在的非编码串联重复序列,但关于它们的生物学相关性的知识仍然很少。在植物中,少数描述的情况表明它们在异染色质生物学和基因调控中起作用;然而,与植物应激反应的直接联系尚未被发现。我们提出的证据表明,特定的非着丝粒串联重复可能在动态环境中表观遗传沉默和基因表达的交叉点中发挥核心调节作用。在拟南芥印迹 SDC 基因座的预测启动子中,转录基因沉默靶向的串联重复区在很大程度上介导了表观遗传抑制和印迹。在这里,我们表明该区域可能作为顺式元件/增强子,对于 SDC 在营养组织中的热转录活性是必需和充分的。我们的结果表明,这些特定的非编码串联重复可能是基因,并表现出双重作用,不仅在正常温度下作为沉默子,而且在应激时也促进表达。这暗示了一种与典型热信号无关的非生物转录控制的特殊适应形式,强调了基因组卫星对植物环境表观遗传学的潜在重要性。

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